miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7637 3' -57.2 NC_001973.1 + 10994 0.68 0.741018
Target:  5'- --cGCUGGCGUU-CUUGGCUaugaugGCGACc -3'
miRNA:   3'- guuUGACCGCAAcGAGCCGGg-----CGCUG- -5'
7637 3' -57.2 NC_001973.1 + 53615 0.69 0.721498
Target:  5'- -cGACUGGCGUUa-UCGGCgCGCG-Cg -3'
miRNA:   3'- guUUGACCGCAAcgAGCCGgGCGCuG- -5'
7637 3' -57.2 NC_001973.1 + 84251 0.69 0.68162
Target:  5'- aGAGCgcGGCGgaggUGCUCGcGCUgaggCGCGACa -3'
miRNA:   3'- gUUUGa-CCGCa---ACGAGC-CGG----GCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 95121 0.7 0.651257
Target:  5'- uCAAGCUGGCGgUGCaCGaCCCGUGGg -3'
miRNA:   3'- -GUUUGACCGCaACGaGCcGGGCGCUg -5'
7637 3' -57.2 NC_001973.1 + 83036 0.7 0.620758
Target:  5'- gCGGGCgaGGCGgcGCgcccgUCGaGCCCGCGGCc -3'
miRNA:   3'- -GUUUGa-CCGCaaCG-----AGC-CGGGCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 53687 0.71 0.590335
Target:  5'- ---uCUGGCGUUGCgauUCGGCgCCGaGGCu -3'
miRNA:   3'- guuuGACCGCAACG---AGCCG-GGCgCUG- -5'
7637 3' -57.2 NC_001973.1 + 24165 0.71 0.580245
Target:  5'- --cGCUGGCGcUGCcgcugCGGCC-GCGGCg -3'
miRNA:   3'- guuUGACCGCaACGa----GCCGGgCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 19804 0.71 0.570191
Target:  5'- --cGCUGGCGUU-CUUGGCUauuauCGCGACc -3'
miRNA:   3'- guuUGACCGCAAcGAGCCGG-----GCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 133252 0.72 0.520688
Target:  5'- gCGAAaugaUGGCGUccaGCUCGGCcucggCCGCGGCc -3'
miRNA:   3'- -GUUUg---ACCGCAa--CGAGCCG-----GGCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 137274 0.73 0.454481
Target:  5'- -cGGC-GGCGggGCUCGGCCgCGCG-Cg -3'
miRNA:   3'- guUUGaCCGCaaCGAGCCGG-GCGCuG- -5'
7637 3' -57.2 NC_001973.1 + 127288 0.74 0.445393
Target:  5'- -cAACUGauGCGUcggccgcGCUCGGCCCGaCGACa -3'
miRNA:   3'- guUUGAC--CGCAa------CGAGCCGGGC-GCUG- -5'
7637 3' -57.2 NC_001973.1 + 46167 0.77 0.30121
Target:  5'- aCGGACUGGUGUUcGCgccGCCCGCGGCc -3'
miRNA:   3'- -GUUUGACCGCAA-CGagcCGGGCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 159103 1.08 0.002403
Target:  5'- uCAAACUGGCGUUGCUCGGCCCGCGACu -3'
miRNA:   3'- -GUUUGACCGCAACGAGCCGGGCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.