miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7638 3' -57 NC_001973.1 + 145600 0.66 0.898222
Target:  5'- gGCCGugGaCCUGagcguccUCGUCGAGAUUg- -3'
miRNA:   3'- -UGGCugCgGGACa------AGCGGCUCUAGuc -5'
7638 3' -57 NC_001973.1 + 36855 0.66 0.885028
Target:  5'- gGCCGacucggcgcGCGCUCUGUUCgacgacgggcgcGCCGAGuUCAc -3'
miRNA:   3'- -UGGC---------UGCGGGACAAG------------CGGCUCuAGUc -5'
7638 3' -57 NC_001973.1 + 48484 0.66 0.873845
Target:  5'- -aCGACGCUgCUGUaCGCCGAaaggaauuuguucaaGAUCGGc -3'
miRNA:   3'- ugGCUGCGG-GACAaGCGGCU---------------CUAGUC- -5'
7638 3' -57 NC_001973.1 + 3355 0.66 0.868051
Target:  5'- cUCGACGCUCUGgugguaguccgcgUCGCCGuGGUUg- -3'
miRNA:   3'- uGGCUGCGGGACa------------AGCGGCuCUAGuc -5'
7638 3' -57 NC_001973.1 + 145114 0.67 0.832271
Target:  5'- gGCCGACGCCaaGUUgacgGCCGAG--CAGg -3'
miRNA:   3'- -UGGCUGCGGgaCAAg---CGGCUCuaGUC- -5'
7638 3' -57 NC_001973.1 + 54675 0.67 0.832271
Target:  5'- cGCCcACGCCCaccUCGCCGAuGggCAGg -3'
miRNA:   3'- -UGGcUGCGGGacaAGCGGCU-CuaGUC- -5'
7638 3' -57 NC_001973.1 + 21340 0.67 0.823974
Target:  5'- aGCCGGcCGCCCgagUUGCCGGuGGUCu- -3'
miRNA:   3'- -UGGCU-GCGGGacaAGCGGCU-CUAGuc -5'
7638 3' -57 NC_001973.1 + 82956 0.68 0.789175
Target:  5'- aACCGACGCCCgcgUCGCCGc------ -3'
miRNA:   3'- -UGGCUGCGGGacaAGCGGCucuaguc -5'
7638 3' -57 NC_001973.1 + 61810 0.68 0.780111
Target:  5'- uGCCGACGCUCgUGgcgGCCGGGAUg-- -3'
miRNA:   3'- -UGGCUGCGGG-ACaagCGGCUCUAguc -5'
7638 3' -57 NC_001973.1 + 47061 0.68 0.780111
Target:  5'- uACgCGACGCCCUGcgCGUCGAauacgacgaaugGAaacUCAGa -3'
miRNA:   3'- -UG-GCUGCGGGACaaGCGGCU------------CU---AGUC- -5'
7638 3' -57 NC_001973.1 + 157490 0.69 0.761606
Target:  5'- aGCCGGgGCUCUGUUUGCaucAGGUCGa -3'
miRNA:   3'- -UGGCUgCGGGACAAGCGgc-UCUAGUc -5'
7638 3' -57 NC_001973.1 + 153926 0.69 0.742655
Target:  5'- cGCCGAgccCGCuCCUGagccuUUCGCCGAGccugCAGa -3'
miRNA:   3'- -UGGCU---GCG-GGAC-----AAGCGGCUCua--GUC- -5'
7638 3' -57 NC_001973.1 + 153887 0.69 0.733035
Target:  5'- gGCCGAgccCGCuCCUGagccuUUCGCCGAGccugCAGa -3'
miRNA:   3'- -UGGCU---GCG-GGAC-----AAGCGGCUCua--GUC- -5'
7638 3' -57 NC_001973.1 + 10201 0.69 0.7311
Target:  5'- gGCaCGGCGCCCUGUggaagaaguccgUGUCGuAGAUCAc -3'
miRNA:   3'- -UG-GCUGCGGGACAa-----------GCGGC-UCUAGUc -5'
7638 3' -57 NC_001973.1 + 150907 0.69 0.722354
Target:  5'- gGCCGACGCguaagauCCUacgcGUcCGCCGGGGUCGu -3'
miRNA:   3'- -UGGCUGCG-------GGA----CAaGCGGCUCUAGUc -5'
7638 3' -57 NC_001973.1 + 119196 0.7 0.677839
Target:  5'- cGCCGAagaagcgcggcggcuCGCCCUG--CGUCGAGGUCGa -3'
miRNA:   3'- -UGGCU---------------GCGGGACaaGCGGCUCUAGUc -5'
7638 3' -57 NC_001973.1 + 109169 0.7 0.663803
Target:  5'- aGCCGGuCGCCCgcgcGcUCGCCGAGcgCGc -3'
miRNA:   3'- -UGGCU-GCGGGa---CaAGCGGCUCuaGUc -5'
7638 3' -57 NC_001973.1 + 25593 0.74 0.467419
Target:  5'- cUCGGCGCCCagccUGUUCGCCGccacGAUCAc -3'
miRNA:   3'- uGGCUGCGGG----ACAAGCGGCu---CUAGUc -5'
7638 3' -57 NC_001973.1 + 158644 0.8 0.230535
Target:  5'- cCCGACGaCCC-GUUCGgCGAGAUCGGg -3'
miRNA:   3'- uGGCUGC-GGGaCAAGCgGCUCUAGUC- -5'
7638 3' -57 NC_001973.1 + 158784 1.06 0.004402
Target:  5'- cCCGACGCCCUGUUCGCCGAGAUCAGa -3'
miRNA:   3'- uGGCUGCGGGACAAGCGGCUCUAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.