miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7638 5' -61.5 NC_001973.1 + 158745 1.07 0.001316
Target:  5'- cAGCUGAAGCCGGCGACCGAGCGCGCGc -3'
miRNA:   3'- -UCGACUUCGGCCGCUGGCUCGCGCGC- -5'
7638 5' -61.5 NC_001973.1 + 158822 0.97 0.006886
Target:  5'- -aUUGAAGCCGGCGGCCGAGCGCGCGg -3'
miRNA:   3'- ucGACUUCGGCCGCUGGCUCGCGCGC- -5'
7638 5' -61.5 NC_001973.1 + 158680 0.97 0.006886
Target:  5'- cGGC-GAAGCCGGCGGCCGAGCGCGCGc -3'
miRNA:   3'- -UCGaCUUCGGCCGCUGGCUCGCGCGC- -5'
7638 5' -61.5 NC_001973.1 + 28653 0.78 0.149604
Target:  5'- cAGCUGcgcGAGCgCGGCG-UCGAGCGCGCu -3'
miRNA:   3'- -UCGAC---UUCG-GCCGCuGGCUCGCGCGc -5'
7638 5' -61.5 NC_001973.1 + 72822 0.76 0.186281
Target:  5'- uGUUGAcgaGGCCGGCGGCCGc-CGCGCa -3'
miRNA:   3'- uCGACU---UCGGCCGCUGGCucGCGCGc -5'
7638 5' -61.5 NC_001973.1 + 111943 0.75 0.218533
Target:  5'- cGGCgacuucuccgacCCGGCGGCCGAGCGCGUGc -3'
miRNA:   3'- -UCGacuuc-------GGCCGCUGGCUCGCGCGC- -5'
7638 5' -61.5 NC_001973.1 + 139049 0.75 0.225318
Target:  5'- cGCgGAAGUCGGCGAagugccguUCGAGCGCGUc -3'
miRNA:   3'- uCGaCUUCGGCCGCU--------GGCUCGCGCGc -5'
7638 5' -61.5 NC_001973.1 + 27853 0.74 0.257203
Target:  5'- uGGCcGgcGCUGGCGGCCGcggccgcgggcgcgGGCGCGCu -3'
miRNA:   3'- -UCGaCuuCGGCCGCUGGC--------------UCGCGCGc -5'
7638 5' -61.5 NC_001973.1 + 63920 0.74 0.27108
Target:  5'- gAGCUGGAGCUGaGCGACUGcGUGcCGCu -3'
miRNA:   3'- -UCGACUUCGGC-CGCUGGCuCGC-GCGc -5'
7638 5' -61.5 NC_001973.1 + 8597 0.74 0.277298
Target:  5'- cGCgagaAAGCCGGCGGCCGcGC-CGCGg -3'
miRNA:   3'- uCGac--UUCGGCCGCUGGCuCGcGCGC- -5'
7638 5' -61.5 NC_001973.1 + 35558 0.74 0.277298
Target:  5'- --gUGGAGCCGGCGAagCGAGC-CGCGu -3'
miRNA:   3'- ucgACUUCGGCCGCUg-GCUCGcGCGC- -5'
7638 5' -61.5 NC_001973.1 + 38833 0.74 0.277298
Target:  5'- cGGC-GGAGgCGGCGGCggCGAGgGCGCGg -3'
miRNA:   3'- -UCGaCUUCgGCCGCUG--GCUCgCGCGC- -5'
7638 5' -61.5 NC_001973.1 + 152373 0.73 0.290076
Target:  5'- gAGC--GAGCCGGaCGGCCGGcGCGgGCGg -3'
miRNA:   3'- -UCGacUUCGGCC-GCUGGCU-CGCgCGC- -5'
7638 5' -61.5 NC_001973.1 + 45987 0.73 0.302638
Target:  5'- uGCUGucGCUGGUGccgcgauGCCG-GCGCGCGa -3'
miRNA:   3'- uCGACuuCGGCCGC-------UGGCuCGCGCGC- -5'
7638 5' -61.5 NC_001973.1 + 133985 0.73 0.317005
Target:  5'- uGGgUGuAGCCGGUGGCCGuGCuCGCGu -3'
miRNA:   3'- -UCgACuUCGGCCGCUGGCuCGcGCGC- -5'
7638 5' -61.5 NC_001973.1 + 99120 0.73 0.317005
Target:  5'- cGUUuAGGCCGGCGAUCGAgGCGgGCu -3'
miRNA:   3'- uCGAcUUCGGCCGCUGGCU-CGCgCGc -5'
7638 5' -61.5 NC_001973.1 + 24120 0.72 0.331161
Target:  5'- cGCUG-AGCCgGGCGAgcuCgCGGGUGCGCGc -3'
miRNA:   3'- uCGACuUCGG-CCGCU---G-GCUCGCGCGC- -5'
7638 5' -61.5 NC_001973.1 + 5551 0.72 0.33188
Target:  5'- cGUUGGAGacgugggaccguucgCGGCGaACCGGGCGCGCu -3'
miRNA:   3'- uCGACUUCg--------------GCCGC-UGGCUCGCGCGc -5'
7638 5' -61.5 NC_001973.1 + 109164 0.72 0.33841
Target:  5'- gGGC--GAGCCGGuCGcccgcgcgcucGCCGAGCGCGCc -3'
miRNA:   3'- -UCGacUUCGGCC-GC-----------UGGCUCGCGCGc -5'
7638 5' -61.5 NC_001973.1 + 71780 0.72 0.356277
Target:  5'- gAGCUcGAGGCCGGCGGCgcccccgucgccgcuCGAGCGUa-- -3'
miRNA:   3'- -UCGA-CUUCGGCCGCUG---------------GCUCGCGcgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.