Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7639 | 3' | -49.3 | NC_001973.1 | + | 55790 | 0.74 | 0.841056 |
Target: 5'- cGGCgCGCUUCGG-AAAAAcGCUCGGCu -3' miRNA: 3'- -UCG-GCGAAGUUgUUUUUuCGAGCCGc -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 56374 | 0.73 | 0.902223 |
Target: 5'- cGCCGCgcUCGGCGcc-AGGCUCGGUa -3' miRNA: 3'- uCGGCGa-AGUUGUuuuUUCGAGCCGc -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 56446 | 0.68 | 0.988086 |
Target: 5'- cGCCaaGCUcgGGCGGGGcGGGCUCGGCGc -3' miRNA: 3'- uCGG--CGAagUUGUUUU-UUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 56500 | 0.68 | 0.988086 |
Target: 5'- cGCCaaGCUcgGGCGGGGcGGGCUCGGCGc -3' miRNA: 3'- uCGG--CGAagUUGUUUU-UUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 56527 | 0.68 | 0.99207 |
Target: 5'- nGCCaaGCUcgGGCGGGGcGGGCUCGGCGc -3' miRNA: 3'- uCGG--CGAagUUGUUUU-UUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 58467 | 0.7 | 0.959618 |
Target: 5'- uAGCCGCccgCugcCAAAcguGCUCGGCGg -3' miRNA: 3'- -UCGGCGaa-Guu-GUUUuuuCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 61095 | 0.76 | 0.756552 |
Target: 5'- aGGCCGCgcggcCGACGGAGcAGCggCGGCGg -3' miRNA: 3'- -UCGGCGaa---GUUGUUUUuUCGa-GCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 61650 | 0.66 | 0.998158 |
Target: 5'- cGCCGCU---GCGAGAGcAGCU-GGCa -3' miRNA: 3'- uCGGCGAaguUGUUUUU-UCGAgCCGc -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 61677 | 0.68 | 0.99207 |
Target: 5'- cAGUCGCggC-GCGAAGcGGCgUCGGCGc -3' miRNA: 3'- -UCGGCGaaGuUGUUUUuUCG-AGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 62547 | 0.69 | 0.978209 |
Target: 5'- cGCCGacuaCUUCGACAucacccugugcGAGGGCUCGaGCGg -3' miRNA: 3'- uCGGC----GAAGUUGUu----------UUUUCGAGC-CGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 62925 | 0.66 | 0.998158 |
Target: 5'- cGCCGaUUCGACuc--GGGC-CGGCGu -3' miRNA: 3'- uCGGCgAAGUUGuuuuUUCGaGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 63942 | 0.69 | 0.984669 |
Target: 5'- uGCCGCUgauccaUCAcCGGc--GGCUCGGCa -3' miRNA: 3'- uCGGCGA------AGUuGUUuuuUCGAGCCGc -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 68910 | 0.66 | 0.997364 |
Target: 5'- uGCCGCgaccacuaucUCAACGucAAGggcuucaucguGCUCGGCGu -3' miRNA: 3'- uCGGCGa---------AGUUGUuuUUU-----------CGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 72096 | 0.66 | 0.997364 |
Target: 5'- uGCUGCcggUGACAucAucccuaacucGAGCUCGGCGg -3' miRNA: 3'- uCGGCGaa-GUUGUuuU----------UUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 73567 | 0.7 | 0.966729 |
Target: 5'- cGGCCcucCUUCGGCGAGAAGuacucGUUCGGCu -3' miRNA: 3'- -UCGGc--GAAGUUGUUUUUU-----CGAGCCGc -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 74194 | 0.69 | 0.982703 |
Target: 5'- cGCgGUUgauGCAAGucacGAGCUCGGCGu -3' miRNA: 3'- uCGgCGAaguUGUUUu---UUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 76451 | 0.71 | 0.941928 |
Target: 5'- cGCgCGCcUCGcCAAGGAcaugggcGGCUCGGCGg -3' miRNA: 3'- uCG-GCGaAGUuGUUUUU-------UCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 81437 | 0.66 | 0.99779 |
Target: 5'- uGCU-CUUCuuCAAAuaauGCUCGGCGa -3' miRNA: 3'- uCGGcGAAGuuGUUUuuu-CGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 81767 | 0.67 | 0.994593 |
Target: 5'- aGGCCGCgaUCAugucgc--GCUCGGCGc -3' miRNA: 3'- -UCGGCGa-AGUuguuuuuuCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 81819 | 0.68 | 0.989556 |
Target: 5'- cGCCGCcggcggCGACGAGAcgacGAGCUCaGGuCGa -3' miRNA: 3'- uCGGCGaa----GUUGUUUU----UUCGAG-CC-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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