Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7639 | 3' | -49.3 | NC_001973.1 | + | 109364 | 0.67 | 0.993132 |
Target: 5'- cGGCCGUagcggUCGACGAGcgccucguAGGCgCGGCGc -3' miRNA: 3'- -UCGGCGa----AGUUGUUUu-------UUCGaGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 134088 | 0.67 | 0.993132 |
Target: 5'- cGaCCGCUcggUCGGCc---AGGUUCGGCGg -3' miRNA: 3'- uC-GGCGA---AGUUGuuuuUUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 127566 | 0.67 | 0.993132 |
Target: 5'- aAGCCGaugagaUCAcgccCAAGcucGAGCUCGGCGg -3' miRNA: 3'- -UCGGCga----AGUu---GUUUu--UUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 19258 | 0.67 | 0.993132 |
Target: 5'- aGGCCGCga-AGCGGAGAucgccgAGCuauuuugccgcgUCGGCGa -3' miRNA: 3'- -UCGGCGaagUUGUUUUU------UCG------------AGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 56527 | 0.68 | 0.99207 |
Target: 5'- nGCCaaGCUcgGGCGGGGcGGGCUCGGCGc -3' miRNA: 3'- uCGG--CGAagUUGUUUU-UUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 10585 | 0.68 | 0.99207 |
Target: 5'- cGGCgCGC-UCGGCAAAGuauuGGCagUUGGCGa -3' miRNA: 3'- -UCG-GCGaAGUUGUUUUu---UCG--AGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 20113 | 0.68 | 0.99207 |
Target: 5'- cAGCCGCgggUCc----GAGGGCUUGGUGa -3' miRNA: 3'- -UCGGCGa--AGuuguuUUUUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 61677 | 0.68 | 0.99207 |
Target: 5'- cAGUCGCggC-GCGAAGcGGCgUCGGCGc -3' miRNA: 3'- -UCGGCGaaGuUGUUUUuUCG-AGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 128151 | 0.68 | 0.99207 |
Target: 5'- cAGCCGCgggUCc----GAGGGCUUGGUGa -3' miRNA: 3'- -UCGGCGa--AGuuguuUUUUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 112486 | 0.68 | 0.991957 |
Target: 5'- aGGCgCGUUUCGGCAGAAAgcccaccAGCUUgaGGCc -3' miRNA: 3'- -UCG-GCGAAGUUGUUUUU-------UCGAG--CCGc -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 132535 | 0.68 | 0.990881 |
Target: 5'- aGGCCGCcgggcgCGGCGGc-GGGCUCGaGCGc -3' miRNA: 3'- -UCGGCGaa----GUUGUUuuUUCGAGC-CGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 83305 | 0.68 | 0.990881 |
Target: 5'- gGGCgCGCUcgucgacugcaUCAACAGGGAGGC--GGCGc -3' miRNA: 3'- -UCG-GCGA-----------AGUUGUUUUUUCGagCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 9084 | 0.68 | 0.990881 |
Target: 5'- uGUCGCgcc-GCGu--GAGCUCGGCGc -3' miRNA: 3'- uCGGCGaaguUGUuuuUUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 81819 | 0.68 | 0.989556 |
Target: 5'- cGCCGCcggcggCGACGAGAcgacGAGCUCaGGuCGa -3' miRNA: 3'- uCGGCGaa----GUUGUUUU----UUCGAG-CC-GC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 107429 | 0.68 | 0.988692 |
Target: 5'- -aCCGCUcuuuauauuuuuuacUgAACAAAAAacuuuugcAGCUCGGCGa -3' miRNA: 3'- ucGGCGA---------------AgUUGUUUUU--------UCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 47749 | 0.68 | 0.988086 |
Target: 5'- cGGCCGCc-CGGCGGAAucacGGCcuccUCGGCGc -3' miRNA: 3'- -UCGGCGaaGUUGUUUUu---UCG----AGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 40022 | 0.68 | 0.988086 |
Target: 5'- aGGCCGaacUCGcgcuGCAGccuGAGCUCGGUGu -3' miRNA: 3'- -UCGGCga-AGU----UGUUuu-UUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 56500 | 0.68 | 0.988086 |
Target: 5'- cGCCaaGCUcgGGCGGGGcGGGCUCGGCGc -3' miRNA: 3'- uCGG--CGAagUUGUUUU-UUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 56446 | 0.68 | 0.988086 |
Target: 5'- cGCCaaGCUcgGGCGGGGcGGGCUCGGCGc -3' miRNA: 3'- uCGG--CGAagUUGUUUU-UUCGAGCCGC- -5' |
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7639 | 3' | -49.3 | NC_001973.1 | + | 139046 | 0.68 | 0.98646 |
Target: 5'- uGCCGCggaagUCGGCGAAGugccGUUCGaGCGc -3' miRNA: 3'- uCGGCGa----AGUUGUUUUuu--CGAGC-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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