miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 5' -63.3 NC_001973.1 + 85721 0.67 0.540488
Target:  5'- aGgCUCgGCCgcaCGgCGUUggaguuggucGCCGCCGCg -3'
miRNA:   3'- -CgGAGgCGGag-GCgGCAA----------CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 3771 0.67 0.540488
Target:  5'- aCCgcgcgCgCGCC-CCGUCcacgGCCGCCGCg -3'
miRNA:   3'- cGGa----G-GCGGaGGCGGcaa-CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 94521 0.67 0.531148
Target:  5'- aCCgCCGCC-CCGCCcg-GCgCGCCGg -3'
miRNA:   3'- cGGaGGCGGaGGCGGcaaCG-GCGGCg -5'
7639 5' -63.3 NC_001973.1 + 18173 0.67 0.528358
Target:  5'- cGCCaCCGCC-CUGUucaGUUccuccagcuucaccGCCGCCGCg -3'
miRNA:   3'- -CGGaGGCGGaGGCGg--CAA--------------CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 150922 0.68 0.521868
Target:  5'- uCCUaCGCgUCCGCCGggGUCGuuGg -3'
miRNA:   3'- cGGAgGCGgAGGCGGCaaCGGCggCg -5'
7639 5' -63.3 NC_001973.1 + 99251 0.68 0.521868
Target:  5'- uGCgaCUGCCacaCCaGCCGUgUGCCGUCGUa -3'
miRNA:   3'- -CGgaGGCGGa--GG-CGGCA-ACGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 146613 0.68 0.512652
Target:  5'- uGCUggagUCGCCUCCGUucgaccccaccaCGUaauaGCUGCCGCc -3'
miRNA:   3'- -CGGa---GGCGGAGGCG------------GCAa---CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 110342 0.68 0.503502
Target:  5'- uGCUggaCGCgUUCGCCGccucgGCgGCCGCg -3'
miRNA:   3'- -CGGag-GCGgAGGCGGCaa---CGgCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 87330 0.68 0.503502
Target:  5'- gGCaCUCCGuUCUCgaCGCCGUaGCCGaCCaGCa -3'
miRNA:   3'- -CG-GAGGC-GGAG--GCGGCAaCGGC-GG-CG- -5'
7639 5' -63.3 NC_001973.1 + 36692 0.68 0.502591
Target:  5'- aGCCUCgCGCggCCGUCGUccGCuucgcgagcaaaaCGCCGCa -3'
miRNA:   3'- -CGGAG-GCGgaGGCGGCAa-CG-------------GCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 71752 0.68 0.494425
Target:  5'- cGCC-CCgGCCg-CGCCGggccCCGCCGCc -3'
miRNA:   3'- -CGGaGG-CGGagGCGGCaac-GGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 80593 0.68 0.480059
Target:  5'- gGCCUCCaCCU-UGCCGacgaccuccuugagcUUGCCGCgGCc -3'
miRNA:   3'- -CGGAGGcGGAgGCGGC---------------AACGGCGgCG- -5'
7639 5' -63.3 NC_001973.1 + 156098 0.68 0.4765
Target:  5'- aGCCgcagCCGCCgCCGCCGccauuuCCuCCGCa -3'
miRNA:   3'- -CGGa---GGCGGaGGCGGCaac---GGcGGCG- -5'
7639 5' -63.3 NC_001973.1 + 41420 0.69 0.467658
Target:  5'- cGCCUCCGCgUCgGCCGacagGCU-CCGg -3'
miRNA:   3'- -CGGAGGCGgAGgCGGCaa--CGGcGGCg -5'
7639 5' -63.3 NC_001973.1 + 115084 0.69 0.458902
Target:  5'- gGCCUCgGCgUCCGCCGagGCgcgaugucugaGCCGg -3'
miRNA:   3'- -CGGAGgCGgAGGCGGCaaCGg----------CGGCg -5'
7639 5' -63.3 NC_001973.1 + 21662 0.69 0.458902
Target:  5'- gGCCgagcacguagCCGCUuaUCCGCaCGggaugcGCCGCCGUc -3'
miRNA:   3'- -CGGa---------GGCGG--AGGCG-GCaa----CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 104241 0.69 0.439103
Target:  5'- cGCgCUgCGCgUCCGUcagcuguucggcggCGgcGCCGCCGCc -3'
miRNA:   3'- -CG-GAgGCGgAGGCG--------------GCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 28423 0.69 0.424786
Target:  5'- cGCUuggCgGCCgCgGCCGccGCCGCCGCc -3'
miRNA:   3'- -CGGa--GgCGGaGgCGGCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 123299 0.69 0.416496
Target:  5'- gGCCagCGCa-CCG-CGUaGCCGCCGCg -3'
miRNA:   3'- -CGGagGCGgaGGCgGCAaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 25715 0.69 0.416496
Target:  5'- aGCCUugcgcgCCGCCcgcgCCGCCGgcGCgGCCu- -3'
miRNA:   3'- -CGGA------GGCGGa---GGCGGCaaCGgCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.