miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
764 3' -49.5 NC_000852.3 + 302665 0.66 0.99995
Target:  5'- -gGAACCuaaugCGGGUCUUGGACCu -3'
miRNA:   3'- gaUUUGGuagugGCCCAGGAUUUGGu -5'
764 3' -49.5 NC_000852.3 + 137902 0.66 0.999949
Target:  5'- ---uACCAuggcgugUCAgCGGGUCgUUAAACCAa -3'
miRNA:   3'- gauuUGGU-------AGUgGCCCAG-GAUUUGGU- -5'
764 3' -49.5 NC_000852.3 + 197624 0.66 0.999935
Target:  5'- -aAAACCcgCAUCGacuGGUCCUGAguuacuuccaguACCAg -3'
miRNA:   3'- gaUUUGGuaGUGGC---CCAGGAUU------------UGGU- -5'
764 3' -49.5 NC_000852.3 + 111736 0.67 0.999873
Target:  5'- -cAAGCCAUaCAUCGuauguuuggucaauGUCCUGAGCCAa -3'
miRNA:   3'- gaUUUGGUA-GUGGCc-------------CAGGAUUUGGU- -5'
764 3' -49.5 NC_000852.3 + 158482 0.67 0.999859
Target:  5'- cCUAAACCGaaGCCaGcUCCUAAGCCc -3'
miRNA:   3'- -GAUUUGGUagUGGcCcAGGAUUUGGu -5'
764 3' -49.5 NC_000852.3 + 50770 0.67 0.999859
Target:  5'- uUGAACCAaagGCUGGGUUUgAAGCCAu -3'
miRNA:   3'- gAUUUGGUag-UGGCCCAGGaUUUGGU- -5'
764 3' -49.5 NC_000852.3 + 66946 0.67 0.999673
Target:  5'- -gAAGCCAUCucgagauaccucgaaACCuuuGGGUCCUugacGACCAc -3'
miRNA:   3'- gaUUUGGUAG---------------UGG---CCCAGGAu---UUGGU- -5'
764 3' -49.5 NC_000852.3 + 54079 0.68 0.999328
Target:  5'- aUAAAUCAUC-CCGGcGUUUUGGGCCc -3'
miRNA:   3'- gAUUUGGUAGuGGCC-CAGGAUUUGGu -5'
764 3' -49.5 NC_000852.3 + 308561 0.69 0.998527
Target:  5'- ---uGCCAggauaacuUCACCGGGUCgUGAaaaacaaGCCAu -3'
miRNA:   3'- gauuUGGU--------AGUGGCCCAGgAUU-------UGGU- -5'
764 3' -49.5 NC_000852.3 + 290275 0.69 0.997943
Target:  5'- ---uAUUGUCAaaGGGUCCUGAAUCAa -3'
miRNA:   3'- gauuUGGUAGUggCCCAGGAUUUGGU- -5'
764 3' -49.5 NC_000852.3 + 68806 0.7 0.99663
Target:  5'- --uGACCAUCACauugcuuGGGUCCgugUGAACCc -3'
miRNA:   3'- gauUUGGUAGUGg------CCCAGG---AUUUGGu -5'
764 3' -49.5 NC_000852.3 + 122714 0.71 0.993876
Target:  5'- -gAAACCcgCACCGaagCCUAAACCGa -3'
miRNA:   3'- gaUUUGGuaGUGGCccaGGAUUUGGU- -5'
764 3' -49.5 NC_000852.3 + 214049 0.71 0.993876
Target:  5'- cCUGGAUCAUCAUUGGGaCCggguuACCAa -3'
miRNA:   3'- -GAUUUGGUAGUGGCCCaGGauu--UGGU- -5'
764 3' -49.5 NC_000852.3 + 122690 0.71 0.993876
Target:  5'- -gAAACCcgCACCGaagCCUAAACCGa -3'
miRNA:   3'- gaUUUGGuaGUGGCccaGGAUUUGGU- -5'
764 3' -49.5 NC_000852.3 + 188844 0.71 0.991939
Target:  5'- cCUAAACCcgCGCCaGGaCCaGGACCAg -3'
miRNA:   3'- -GAUUUGGuaGUGGcCCaGGaUUUGGU- -5'
764 3' -49.5 NC_000852.3 + 98508 0.72 0.984959
Target:  5'- gUGAACCAauacccgaACCuGGUCCUGAACCu -3'
miRNA:   3'- gAUUUGGUag------UGGcCCAGGAUUUGGu -5'
764 3' -49.5 NC_000852.3 + 273628 0.72 0.98114
Target:  5'- -gAGACCGaCACCGGGaccugcUCCUGuGCCGa -3'
miRNA:   3'- gaUUUGGUaGUGGCCC------AGGAUuUGGU- -5'
764 3' -49.5 NC_000852.3 + 251891 0.73 0.976638
Target:  5'- -gGAACCAagACCGGGUUCUcacacgAAGCCu -3'
miRNA:   3'- gaUUUGGUagUGGCCCAGGA------UUUGGu -5'
764 3' -49.5 NC_000852.3 + 274529 0.74 0.950692
Target:  5'- gUGAACCGUUACaaCGGGcCUUAAACCGg -3'
miRNA:   3'- gAUUUGGUAGUG--GCCCaGGAUUUGGU- -5'
764 3' -49.5 NC_000852.3 + 270852 0.92 0.248333
Target:  5'- -aAAGCCcUCACCGGGUCCUAAGCCc -3'
miRNA:   3'- gaUUUGGuAGUGGCCCAGGAUUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.