miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 3' -49.6 NC_001973.1 + 54984 0.66 0.997949
Target:  5'- aGGCgGCggCGGCGGCAUuucgcUCAGCu- -3'
miRNA:   3'- gCCG-CGuaGCUGUCGUAua---AGUUGcu -5'
7640 3' -49.6 NC_001973.1 + 45885 0.66 0.997949
Target:  5'- gCGGCGCugcucGUCGACuucgagacGGCAccgacgUGUUCGACa- -3'
miRNA:   3'- -GCCGCG-----UAGCUG--------UCGU------AUAAGUUGcu -5'
7640 3' -49.6 NC_001973.1 + 8173 0.66 0.997595
Target:  5'- uCGGCGgGUCGACGGacgagcgcgcCGACGGc -3'
miRNA:   3'- -GCCGCgUAGCUGUCguauaa----GUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 121013 0.66 0.997553
Target:  5'- gGGCGCGUUGGCGGCcaagUCcuGCa- -3'
miRNA:   3'- gCCGCGUAGCUGUCGuauaAGu-UGcu -5'
7640 3' -49.6 NC_001973.1 + 46700 0.67 0.995279
Target:  5'- aGGCGCGU--ACGGCAUGUcCAaaugguACGAg -3'
miRNA:   3'- gCCGCGUAgcUGUCGUAUAaGU------UGCU- -5'
7640 3' -49.6 NC_001973.1 + 1020 0.67 0.995279
Target:  5'- gCGGCGCGUCGccgaaAUAGUAU-UUguACGAc -3'
miRNA:   3'- -GCCGCGUAGC-----UGUCGUAuAAguUGCU- -5'
7640 3' -49.6 NC_001973.1 + 83305 0.67 0.9945
Target:  5'- gGGCGCgcucGUCGACuGCA---UCAACa- -3'
miRNA:   3'- gCCGCG----UAGCUGuCGUauaAGUUGcu -5'
7640 3' -49.6 NC_001973.1 + 99347 0.67 0.994417
Target:  5'- gCGcGCGCGUCGACuucgcccGGCGccacCAACGAa -3'
miRNA:   3'- -GC-CGCGUAGCUG-------UCGUauaaGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 109876 0.67 0.995966
Target:  5'- gCGGCGCGcggCGucuACGGCAcGUUCAugauCGAc -3'
miRNA:   3'- -GCCGCGUa--GC---UGUCGUaUAAGUu---GCU- -5'
7640 3' -49.6 NC_001973.1 + 53427 0.67 0.995966
Target:  5'- gGGCGCGUCGA-AGCAguacacCAGCa- -3'
miRNA:   3'- gCCGCGUAGCUgUCGUauaa--GUUGcu -5'
7640 3' -49.6 NC_001973.1 + 122606 0.67 0.995966
Target:  5'- gCGGCggagGCGUCGGCGGCGc---CGACGc -3'
miRNA:   3'- -GCCG----CGUAGCUGUCGUauaaGUUGCu -5'
7640 3' -49.6 NC_001973.1 + 23785 0.67 0.996569
Target:  5'- aCGcGCGCAUCGucgaguACGGCcacuucUUCGGCGAc -3'
miRNA:   3'- -GC-CGCGUAGC------UGUCGuau---AAGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 121306 0.67 0.996569
Target:  5'- gCGGCGCG-CGcCGGCGgacgcgcCGACGAg -3'
miRNA:   3'- -GCCGCGUaGCuGUCGUauaa---GUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 122690 0.67 0.996569
Target:  5'- gCGGCGauccaAUCG-CAGCAgucGUUCGACc- -3'
miRNA:   3'- -GCCGCg----UAGCuGUCGUa--UAAGUUGcu -5'
7640 3' -49.6 NC_001973.1 + 123515 0.67 0.996569
Target:  5'- aCGGCGCGcUCGcCGGCGcagugCAGCGc -3'
miRNA:   3'- -GCCGCGU-AGCuGUCGUauaa-GUUGCu -5'
7640 3' -49.6 NC_001973.1 + 31364 0.68 0.988916
Target:  5'- uGGuCGCcgCGGCGGUGUGcgcCAGCGAc -3'
miRNA:   3'- gCC-GCGuaGCUGUCGUAUaa-GUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 87429 0.68 0.988916
Target:  5'- uCGGcCGCGUCGAUAGcCAUGgggaugggccCGACGGc -3'
miRNA:   3'- -GCC-GCGUAGCUGUC-GUAUaa--------GUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 10747 0.68 0.990288
Target:  5'- -aGCGCAUCaGCGGCGgGUgcgCGACGGg -3'
miRNA:   3'- gcCGCGUAGcUGUCGUaUAa--GUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 121591 0.68 0.991523
Target:  5'- gCGGCgaccGCGUCGAuCAGCGUGUgauuguCGAg -3'
miRNA:   3'- -GCCG----CGUAGCU-GUCGUAUAaguu--GCU- -5'
7640 3' -49.6 NC_001973.1 + 133812 0.68 0.988771
Target:  5'- aCGGCGUGUUgaaauacaucuugGAgAGCGUGU-CGACGAu -3'
miRNA:   3'- -GCCGCGUAG-------------CUgUCGUAUAaGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.