Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7640 | 3' | -49.6 | NC_001973.1 | + | 97873 | 0.66 | 0.997095 |
Target: 5'- gGGC-CGUCGugGGCGUAgcagUCGcccuucaugcacACGAa -3' miRNA: 3'- gCCGcGUAGCugUCGUAUa---AGU------------UGCU- -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 111933 | 0.66 | 0.997095 |
Target: 5'- uGGUGCG-CGGCGGCGacUUCucCGAc -3' miRNA: 3'- gCCGCGUaGCUGUCGUauAAGuuGCU- -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 95979 | 0.66 | 0.997095 |
Target: 5'- gGGCGCGcugguguccuUCGACAGCGccgaaucgaUAcUCGACa- -3' miRNA: 3'- gCCGCGU----------AGCUGUCGU---------AUaAGUUGcu -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 96761 | 0.66 | 0.997095 |
Target: 5'- cCGGCGaGUCgGGCGGCGUGgcggcCAACGc -3' miRNA: 3'- -GCCGCgUAG-CUGUCGUAUaa---GUUGCu -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 23785 | 0.67 | 0.996569 |
Target: 5'- aCGcGCGCAUCGucgaguACGGCcacuucUUCGGCGAc -3' miRNA: 3'- -GC-CGCGUAGC------UGUCGuau---AAGUUGCU- -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 121306 | 0.67 | 0.996569 |
Target: 5'- gCGGCGCG-CGcCGGCGgacgcgcCGACGAg -3' miRNA: 3'- -GCCGCGUaGCuGUCGUauaa---GUUGCU- -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 122690 | 0.67 | 0.996569 |
Target: 5'- gCGGCGauccaAUCG-CAGCAgucGUUCGACc- -3' miRNA: 3'- -GCCGCg----UAGCuGUCGUa--UAAGUUGcu -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 123515 | 0.67 | 0.996569 |
Target: 5'- aCGGCGCGcUCGcCGGCGcagugCAGCGc -3' miRNA: 3'- -GCCGCGU-AGCuGUCGUauaa-GUUGCu -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 109876 | 0.67 | 0.995966 |
Target: 5'- gCGGCGCGcggCGucuACGGCAcGUUCAugauCGAc -3' miRNA: 3'- -GCCGCGUa--GC---UGUCGUaUAAGUu---GCU- -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 53427 | 0.67 | 0.995966 |
Target: 5'- gGGCGCGUCGA-AGCAguacacCAGCa- -3' miRNA: 3'- gCCGCGUAGCUgUCGUauaa--GUUGcu -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 122606 | 0.67 | 0.995966 |
Target: 5'- gCGGCggagGCGUCGGCGGCGc---CGACGc -3' miRNA: 3'- -GCCG----CGUAGCUGUCGUauaaGUUGCu -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 46700 | 0.67 | 0.995279 |
Target: 5'- aGGCGCGU--ACGGCAUGUcCAaaugguACGAg -3' miRNA: 3'- gCCGCGUAgcUGUCGUAUAaGU------UGCU- -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 1020 | 0.67 | 0.995279 |
Target: 5'- gCGGCGCGUCGccgaaAUAGUAU-UUguACGAc -3' miRNA: 3'- -GCCGCGUAGC-----UGUCGUAuAAguUGCU- -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 83305 | 0.67 | 0.9945 |
Target: 5'- gGGCGCgcucGUCGACuGCA---UCAACa- -3' miRNA: 3'- gCCGCG----UAGCUGuCGUauaAGUUGcu -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 99347 | 0.67 | 0.994417 |
Target: 5'- gCGcGCGCGUCGACuucgcccGGCGccacCAACGAa -3' miRNA: 3'- -GC-CGCGUAGCUG-------UCGUauaaGUUGCU- -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 91545 | 0.68 | 0.992631 |
Target: 5'- cCGGCGguuCGUCGGCGGCGUcgcacgcuuGUcgCGAUGAg -3' miRNA: 3'- -GCCGC---GUAGCUGUCGUA---------UAa-GUUGCU- -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 121591 | 0.68 | 0.991523 |
Target: 5'- gCGGCgaccGCGUCGAuCAGCGUGUgauuguCGAg -3' miRNA: 3'- -GCCG----CGUAGCU-GUCGUAUAaguu--GCU- -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 10747 | 0.68 | 0.990288 |
Target: 5'- -aGCGCAUCaGCGGCGgGUgcgCGACGGg -3' miRNA: 3'- gcCGCGUAGcUGUCGUaUAa--GUUGCU- -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 87429 | 0.68 | 0.988916 |
Target: 5'- uCGGcCGCGUCGAUAGcCAUGgggaugggccCGACGGc -3' miRNA: 3'- -GCC-GCGUAGCUGUC-GUAUaa--------GUUGCU- -5' |
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7640 | 3' | -49.6 | NC_001973.1 | + | 31364 | 0.68 | 0.988916 |
Target: 5'- uGGuCGCcgCGGCGGUGUGcgcCAGCGAc -3' miRNA: 3'- gCC-GCGuaGCUGUCGUAUaa-GUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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