Results 41 - 60 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7640 | 5' | -62.8 | NC_001973.1 | + | 6117 | 0.66 | 0.650497 |
Target: 5'- cGGC-GCGCGAgGgCGCCgCgauaCGCCG-CCu -3' miRNA: 3'- -UCGaCGCGCUgC-GCGG-Ga---GCGGCaGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 42072 | 0.66 | 0.660174 |
Target: 5'- uGuCUGCGCGcCGCGgUg-CGCuCGUCCg -3' miRNA: 3'- uC-GACGCGCuGCGCgGgaGCG-GCAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 71780 | 0.66 | 0.660174 |
Target: 5'- gAGCUcgagGCcgGCGGCGCcCCCgUCGCCGcUCg -3' miRNA: 3'- -UCGA----CG--CGCUGCGcGGG-AGCGGC-AGg -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 108918 | 0.66 | 0.660174 |
Target: 5'- uGGC-GCGCGuCaCGCUCUCGCUGcUCg -3' miRNA: 3'- -UCGaCGCGCuGcGCGGGAGCGGC-AGg -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 21568 | 0.66 | 0.660174 |
Target: 5'- cGGC-GCGCGGgGUugaaGUgCUCGCCGgCCg -3' miRNA: 3'- -UCGaCGCGCUgCG----CGgGAGCGGCaGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 59829 | 0.66 | 0.640808 |
Target: 5'- gAGgUGCGCGACaaCGCCg-CGCUGgCCa -3' miRNA: 3'- -UCgACGCGCUGc-GCGGgaGCGGCaGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 112771 | 0.66 | 0.640808 |
Target: 5'- cGGCU-CGuCGACGCucuccaccguGCCCaagUCGCCGUUg -3' miRNA: 3'- -UCGAcGC-GCUGCG----------CGGG---AGCGGCAGg -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 47978 | 0.66 | 0.621417 |
Target: 5'- aGGCUcgGCGCGcCGCGCUCUCa--GUUCg -3' miRNA: 3'- -UCGA--CGCGCuGCGCGGGAGcggCAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 70088 | 0.66 | 0.621417 |
Target: 5'- gGGCucgauguugUGCGCGAgCGCGaacgCCUCGgCGcCCg -3' miRNA: 3'- -UCG---------ACGCGCU-GCGCg---GGAGCgGCaGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 42784 | 0.66 | 0.621417 |
Target: 5'- cAGCaaGCGCG-CGCGCCaaC-CCGUCUa -3' miRNA: 3'- -UCGa-CGCGCuGCGCGGgaGcGGCAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 89108 | 0.66 | 0.625295 |
Target: 5'- gAGCUcCGCgGGCGCGCucuCCuccucccaaucgagcUCGCCGUCg -3' miRNA: 3'- -UCGAcGCG-CUGCGCG---GG---------------AGCGGCAGg -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 33497 | 0.66 | 0.631112 |
Target: 5'- -cUUGC-CGACGCGCaCgUCGCaGUCCc -3' miRNA: 3'- ucGACGcGCUGCGCG-GgAGCGgCAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 39424 | 0.66 | 0.631112 |
Target: 5'- cGGUgagGCGCGuCGCGUCCagggcgaCGCCGaugCCc -3' miRNA: 3'- -UCGa--CGCGCuGCGCGGGa------GCGGCa--GG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 106832 | 0.66 | 0.631112 |
Target: 5'- cGCuUGCGCc-CGCGCCCgCGCCcgcgCCc -3' miRNA: 3'- uCG-ACGCGcuGCGCGGGaGCGGca--GG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 34342 | 0.66 | 0.631112 |
Target: 5'- gAGCUcccaGCGCGAguCGgGCgCgUCGCCcUCCg -3' miRNA: 3'- -UCGA----CGCGCU--GCgCG-GgAGCGGcAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 96200 | 0.66 | 0.631112 |
Target: 5'- aAGCcgGuCGCGGUGCGCCaccagagUCGCCGcCCc -3' miRNA: 3'- -UCGa-C-GCGCUGCGCGGg------AGCGGCaGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 138431 | 0.66 | 0.631112 |
Target: 5'- aAGUUGCGCG-CGCGCggaaaggCGCgCGUCa -3' miRNA: 3'- -UCGACGCGCuGCGCGgga----GCG-GCAGg -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 57945 | 0.66 | 0.638869 |
Target: 5'- --gUGgGCGACG-GCCCgaaaaaugcacgCGCCGUCg -3' miRNA: 3'- ucgACgCGCUGCgCGGGa-----------GCGGCAGg -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 132176 | 0.66 | 0.640808 |
Target: 5'- uGUUG-GUGAC-CGUCCucgUCGCUGUCCa -3' miRNA: 3'- uCGACgCGCUGcGCGGG---AGCGGCAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 39716 | 0.66 | 0.640808 |
Target: 5'- gAGCaGCGCGGC-CGCCaugucCGC-GUCCa -3' miRNA: 3'- -UCGaCGCGCUGcGCGGga---GCGgCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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