miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7641 3' -58.7 NC_001973.1 + 39814 0.66 0.831976
Target:  5'- gGgCCACGGCCU-CCGacaggggcuccgcgcGUCGAucGUGCAg -3'
miRNA:   3'- -CgGGUGCCGGGuGGU---------------CAGCUu-CACGU- -5'
7641 3' -58.7 NC_001973.1 + 124001 0.66 0.828697
Target:  5'- -gUCGCGGCCUgACCAGUCGg---GCGa -3'
miRNA:   3'- cgGGUGCCGGG-UGGUCAGCuucaCGU- -5'
7641 3' -58.7 NC_001973.1 + 45970 0.66 0.820379
Target:  5'- gGCCgGCGcGCUCGCCcugcuGUCGcuGGUGCc -3'
miRNA:   3'- -CGGgUGC-CGGGUGGu----CAGCu-UCACGu -5'
7641 3' -58.7 NC_001973.1 + 39962 0.66 0.820379
Target:  5'- aGCCC-CGGCgCCuCCGGgcCGAAGcgGCGc -3'
miRNA:   3'- -CGGGuGCCG-GGuGGUCa-GCUUCa-CGU- -5'
7641 3' -58.7 NC_001973.1 + 83934 0.66 0.820379
Target:  5'- aGCggaCACGGCgCGCCGcUCGGAG-GCGg -3'
miRNA:   3'- -CGg--GUGCCGgGUGGUcAGCUUCaCGU- -5'
7641 3' -58.7 NC_001973.1 + 21694 0.66 0.811898
Target:  5'- uGCgCCGCcGUCgGCUGGUCGAAGUGa- -3'
miRNA:   3'- -CG-GGUGcCGGgUGGUCAGCUUCACgu -5'
7641 3' -58.7 NC_001973.1 + 39880 0.66 0.80326
Target:  5'- cGCUCgGCGGCaCCgGCCGGUuguugucgaagaCGGAGUGCc -3'
miRNA:   3'- -CGGG-UGCCG-GG-UGGUCA------------GCUUCACGu -5'
7641 3' -58.7 NC_001973.1 + 120582 0.66 0.80326
Target:  5'- uGCUauCACGGgCgCGCCgAGUCGcGGUGCGc -3'
miRNA:   3'- -CGG--GUGCCgG-GUGG-UCAGCuUCACGU- -5'
7641 3' -58.7 NC_001973.1 + 159120 0.66 0.794474
Target:  5'- gGCCCGCGaCUgaGCgAGUCGGAGcGCAa -3'
miRNA:   3'- -CGGGUGCcGGg-UGgUCAGCUUCaCGU- -5'
7641 3' -58.7 NC_001973.1 + 107898 0.66 0.794474
Target:  5'- gGCCgACGccgaacugagcGCCCACCGuUCGAAGcagGCGa -3'
miRNA:   3'- -CGGgUGC-----------CGGGUGGUcAGCUUCa--CGU- -5'
7641 3' -58.7 NC_001973.1 + 44871 0.66 0.785548
Target:  5'- cGUCCACGauGCCCACgCAcaCGgAGGUGCGg -3'
miRNA:   3'- -CGGGUGC--CGGGUG-GUcaGC-UUCACGU- -5'
7641 3' -58.7 NC_001973.1 + 83060 0.66 0.785548
Target:  5'- aGCCCGCGGCCUccuccuccuCCGG-CGAGcGgcgGCGg -3'
miRNA:   3'- -CGGGUGCCGGGu--------GGUCaGCUU-Ca--CGU- -5'
7641 3' -58.7 NC_001973.1 + 146500 0.67 0.776489
Target:  5'- gGCCCucUGGCCCGCgGGaUCGucGgGCAg -3'
miRNA:   3'- -CGGGu-GCCGGGUGgUC-AGCuuCaCGU- -5'
7641 3' -58.7 NC_001973.1 + 7188 0.67 0.775576
Target:  5'- uGUCCACGGgCggguucgUGCCGGUCGAaauaaAGUGCc -3'
miRNA:   3'- -CGGGUGCCgG-------GUGGUCAGCU-----UCACGu -5'
7641 3' -58.7 NC_001973.1 + 64602 0.67 0.767306
Target:  5'- cGCCCGcCGGCCCGgCgaaAGUCGgcGccgaGCAa -3'
miRNA:   3'- -CGGGU-GCCGGGUgG---UCAGCuuCa---CGU- -5'
7641 3' -58.7 NC_001973.1 + 119205 0.67 0.758008
Target:  5'- aGCgCgGCGGCUCGCCcugcGUCGAGGUcgacgccgaGCAg -3'
miRNA:   3'- -CG-GgUGCCGGGUGGu---CAGCUUCA---------CGU- -5'
7641 3' -58.7 NC_001973.1 + 21563 0.67 0.748603
Target:  5'- gGUCC-CGGCgCGCgGgGUUGAAGUGCu -3'
miRNA:   3'- -CGGGuGCCGgGUGgU-CAGCUUCACGu -5'
7641 3' -58.7 NC_001973.1 + 88986 0.67 0.748603
Target:  5'- aGUCgACGGCCugCAUCAGUCuGAAG-GCGu -3'
miRNA:   3'- -CGGgUGCCGG--GUGGUCAG-CUUCaCGU- -5'
7641 3' -58.7 NC_001973.1 + 3840 0.67 0.7391
Target:  5'- cGCCggcgauUugGGCCgGCUcGUCGAuGUGCAu -3'
miRNA:   3'- -CGG------GugCCGGgUGGuCAGCUuCACGU- -5'
7641 3' -58.7 NC_001973.1 + 128418 0.67 0.729508
Target:  5'- gGCCCACGGCgCCucccuGCCuuGGUUGGuggccgcGUGCAc -3'
miRNA:   3'- -CGGGUGCCG-GG-----UGG--UCAGCUu------CACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.