miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7641 3' -58.7 NC_001973.1 + 83060 0.66 0.785548
Target:  5'- aGCCCGCGGCCUccuccuccuCCGG-CGAGcGgcgGCGg -3'
miRNA:   3'- -CGGGUGCCGGGu--------GGUCaGCUU-Ca--CGU- -5'
7641 3' -58.7 NC_001973.1 + 83934 0.66 0.820379
Target:  5'- aGCggaCACGGCgCGCCGcUCGGAG-GCGg -3'
miRNA:   3'- -CGg--GUGCCGgGUGGUcAGCUUCaCGU- -5'
7641 3' -58.7 NC_001973.1 + 87534 0.68 0.690419
Target:  5'- aCgUACGGCCgguGCCGGUCGAGGccGCAu -3'
miRNA:   3'- cGgGUGCCGGg--UGGUCAGCUUCa-CGU- -5'
7641 3' -58.7 NC_001973.1 + 87787 0.71 0.554935
Target:  5'- cGCCC-UGGUucuuaaucgacgucaCCuuguucuguucgGCCAGUCGAAGUGCAg -3'
miRNA:   3'- -CGGGuGCCG---------------GG------------UGGUCAGCUUCACGU- -5'
7641 3' -58.7 NC_001973.1 + 88986 0.67 0.748603
Target:  5'- aGUCgACGGCCugCAUCAGUCuGAAG-GCGu -3'
miRNA:   3'- -CGGgUGCCGG--GUGGUCAG-CUUCaCGU- -5'
7641 3' -58.7 NC_001973.1 + 94407 0.68 0.71009
Target:  5'- gGCCCGCGGCgCCGCCcGgacCGgcG-GCGu -3'
miRNA:   3'- -CGGGUGCCG-GGUGGuCa--GCuuCaCGU- -5'
7641 3' -58.7 NC_001973.1 + 106862 0.68 0.71009
Target:  5'- cGCCCGCGcgguauuaucGCgCGCCGGcCGAAccGUGCGc -3'
miRNA:   3'- -CGGGUGC----------CGgGUGGUCaGCUU--CACGU- -5'
7641 3' -58.7 NC_001973.1 + 107898 0.66 0.794474
Target:  5'- gGCCgACGccgaacugagcGCCCACCGuUCGAAGcagGCGa -3'
miRNA:   3'- -CGGgUGC-----------CGGGUGGUcAGCUUCa--CGU- -5'
7641 3' -58.7 NC_001973.1 + 119205 0.67 0.758008
Target:  5'- aGCgCgGCGGCUCGCCcugcGUCGAGGUcgacgccgaGCAg -3'
miRNA:   3'- -CG-GgUGCCGGGUGGu---CAGCUUCA---------CGU- -5'
7641 3' -58.7 NC_001973.1 + 120582 0.66 0.80326
Target:  5'- uGCUauCACGGgCgCGCCgAGUCGcGGUGCGc -3'
miRNA:   3'- -CGG--GUGCCgG-GUGG-UCAGCuUCACGU- -5'
7641 3' -58.7 NC_001973.1 + 121301 0.68 0.71009
Target:  5'- cGCCCGCGGCgCgCGCCGG-CGGAc-GCGc -3'
miRNA:   3'- -CGGGUGCCG-G-GUGGUCaGCUUcaCGU- -5'
7641 3' -58.7 NC_001973.1 + 123512 0.69 0.650583
Target:  5'- -aCCACGGCgcgcUCGCCGG-CGcAGUGCAg -3'
miRNA:   3'- cgGGUGCCG----GGUGGUCaGCuUCACGU- -5'
7641 3' -58.7 NC_001973.1 + 124001 0.66 0.828697
Target:  5'- -gUCGCGGCCUgACCAGUCGg---GCGa -3'
miRNA:   3'- cgGGUGCCGGG-UGGUCAGCuucaCGU- -5'
7641 3' -58.7 NC_001973.1 + 128418 0.67 0.729508
Target:  5'- gGCCCACGGCgCCucccuGCCuuGGUUGGuggccgcGUGCAc -3'
miRNA:   3'- -CGGGUGCCG-GG-----UGG--UCAGCUu------CACGU- -5'
7641 3' -58.7 NC_001973.1 + 138887 0.71 0.512321
Target:  5'- --gCACGGCCgCGCC-GUCGAuGGUGCAc -3'
miRNA:   3'- cggGUGCCGG-GUGGuCAGCU-UCACGU- -5'
7641 3' -58.7 NC_001973.1 + 143529 0.68 0.71009
Target:  5'- cGCCCGauGCUgGCCGGcUCGAAGccuuUGCGc -3'
miRNA:   3'- -CGGGUgcCGGgUGGUC-AGCUUC----ACGU- -5'
7641 3' -58.7 NC_001973.1 + 146500 0.67 0.776489
Target:  5'- gGCCCucUGGCCCGCgGGaUCGucGgGCAg -3'
miRNA:   3'- -CGGGu-GCCGGGUGgUC-AGCuuCaCGU- -5'
7641 3' -58.7 NC_001973.1 + 157230 1.1 0.001481
Target:  5'- cGCCCACGGCCCACCAGUCGAAGUGCAc -3'
miRNA:   3'- -CGGGUGCCGGGUGGUCAGCUUCACGU- -5'
7641 3' -58.7 NC_001973.1 + 159120 0.66 0.794474
Target:  5'- gGCCCGCGaCUgaGCgAGUCGGAGcGCAa -3'
miRNA:   3'- -CGGGUGCcGGg-UGgUCAGCUUCaCGU- -5'
7641 3' -58.7 NC_001973.1 + 160037 0.72 0.447573
Target:  5'- gGUCCuCGGCCaccaagUACCGGUCGAGGUGg- -3'
miRNA:   3'- -CGGGuGCCGG------GUGGUCAGCUUCACgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.