miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7644 3' -58.3 NC_001973.1 + 154600 0.66 0.838997
Target:  5'- -aGCCCAAGUCCUCcUCUGacaaGUCc- -3'
miRNA:   3'- ucCGGGUUCAGGAGaAGGCgg--CAGag -5'
7644 3' -58.3 NC_001973.1 + 80052 0.66 0.830015
Target:  5'- cGGGCuugcgcgCCGGGUCCUCcUCUuugcggcgcuugGCCGUCgUCg -3'
miRNA:   3'- -UCCG-------GGUUCAGGAGaAGG------------CGGCAG-AG- -5'
7644 3' -58.3 NC_001973.1 + 96415 0.67 0.778483
Target:  5'- cGGGCCgauagcgcugCAAGaugCCUCccgccaCCGCCGUCUUg -3'
miRNA:   3'- -UCCGG----------GUUCa--GGAGaa----GGCGGCAGAG- -5'
7644 3' -58.3 NC_001973.1 + 78854 0.67 0.750473
Target:  5'- -aGCCCGAGUCgUCggacgCUGCCGaUCUg -3'
miRNA:   3'- ucCGGGUUCAGgAGaa---GGCGGC-AGAg -5'
7644 3' -58.3 NC_001973.1 + 25941 0.69 0.618573
Target:  5'- cGGGCucgcggCCGAGUCCUCcUCgucgucuucgucguCGUCGUCUCg -3'
miRNA:   3'- -UCCG------GGUUCAGGAGaAG--------------GCGGCAGAG- -5'
7644 3' -58.3 NC_001973.1 + 137896 0.71 0.551577
Target:  5'- gAGGCCCGAGUgcaCCUUggugaCCGUCGUC-Ca -3'
miRNA:   3'- -UCCGGGUUCA---GGAGaa---GGCGGCAGaG- -5'
7644 3' -58.3 NC_001973.1 + 154150 0.72 0.465576
Target:  5'- -aGUCCAGGUCCcCUUCCGCCGa--- -3'
miRNA:   3'- ucCGGGUUCAGGaGAAGGCGGCagag -5'
7644 3' -58.3 NC_001973.1 + 131578 0.74 0.392853
Target:  5'- aAGGCCaCugcggcaacuucugGAG-CCUCUcggCCGCCGUCUCg -3'
miRNA:   3'- -UCCGG-G--------------UUCaGGAGAa--GGCGGCAGAG- -5'
7644 3' -58.3 NC_001973.1 + 154447 0.76 0.303715
Target:  5'- -aGCCCAAGUCCUCUUCCgacaaGCCcUCUg -3'
miRNA:   3'- ucCGGGUUCAGGAGAAGG-----CGGcAGAg -5'
7644 3' -58.3 NC_001973.1 + 149059 0.76 0.290128
Target:  5'- aGGGCauugCCAAGUCCaagUCCGUCGUCUCc -3'
miRNA:   3'- -UCCG----GGUUCAGGagaAGGCGGCAGAG- -5'
7644 3' -58.3 NC_001973.1 + 154923 0.81 0.143299
Target:  5'- -aGCCCAAGUCUUCaUCCGCCGUCc- -3'
miRNA:   3'- ucCGGGUUCAGGAGaAGGCGGCAGag -5'
7644 3' -58.3 NC_001973.1 + 154851 0.82 0.116789
Target:  5'- -aGCCCAAaUCCUCUUCCGCCGUCc- -3'
miRNA:   3'- ucCGGGUUcAGGAGAAGGCGGCAGag -5'
7644 3' -58.3 NC_001973.1 + 154387 0.86 0.069237
Target:  5'- -aGCCCAAGUCCUCUUCCGCCGa--- -3'
miRNA:   3'- ucCGGGUUCAGGAGAAGGCGGCagag -5'
7644 3' -58.3 NC_001973.1 + 154327 0.86 0.069237
Target:  5'- -aGCCCAAGUCCUCUUCCGCCGa--- -3'
miRNA:   3'- ucCGGGUUCAGGAGAAGGCGGCagag -5'
7644 3' -58.3 NC_001973.1 + 154217 1.08 0.002026
Target:  5'- cAGGCCCAAGUCCUCUUCCGCCGUCUCc -3'
miRNA:   3'- -UCCGGGUUCAGGAGAAGGCGGCAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.