miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 3' -57.2 NC_001973.1 + 153877 1.08 0.002314
Target:  5'- cAGAAAUUGCGGCCGAGCCCGCUCCUGa -3'
miRNA:   3'- -UCUUUAACGCCGGCUCGGGCGAGGAC- -5'
7645 3' -57.2 NC_001973.1 + 153914 0.82 0.137725
Target:  5'- cGAGccUGCagacGCCGAGCCCGCUCCUGa -3'
miRNA:   3'- uCUUuaACGc---CGGCUCGGGCGAGGAC- -5'
7645 3' -57.2 NC_001973.1 + 153953 0.77 0.27533
Target:  5'- cGAGccUGCagacGCCGAGCCCGCUCCUu -3'
miRNA:   3'- uCUUuaACGc---CGGCUCGGGCGAGGAc -5'
7645 3' -57.2 NC_001973.1 + 158683 0.75 0.386207
Target:  5'- cGAAGccgGCGGCCGAGCgCGCgCCUa -3'
miRNA:   3'- uCUUUaa-CGCCGGCUCGgGCGaGGAc -5'
7645 3' -57.2 NC_001973.1 + 155299 0.75 0.386207
Target:  5'- ------cGCucCCGAGCCCGCUCCUGa -3'
miRNA:   3'- ucuuuaaCGccGGCUCGGGCGAGGAC- -5'
7645 3' -57.2 NC_001973.1 + 121285 0.72 0.513032
Target:  5'- cGAAAUUcGCGGCCGucGCCCGCggcgcgcgCCg- -3'
miRNA:   3'- uCUUUAA-CGCCGGCu-CGGGCGa-------GGac -5'
7645 3' -57.2 NC_001973.1 + 158824 0.69 0.674128
Target:  5'- uGAAGccgGCGGCCGAGCgCGCggacgagCCg- -3'
miRNA:   3'- uCUUUaa-CGCCGGCUCGgGCGa------GGac -5'
7645 3' -57.2 NC_001973.1 + 117801 0.69 0.704324
Target:  5'- ---cGUUGC-GCCG-GCCUGUUCCUGa -3'
miRNA:   3'- ucuuUAACGcCGGCuCGGGCGAGGAC- -5'
7645 3' -57.2 NC_001973.1 + 145123 0.69 0.714281
Target:  5'- -cAAGUUGaCGGCCGAGCagGCUCUg- -3'
miRNA:   3'- ucUUUAAC-GCCGGCUCGggCGAGGac -5'
7645 3' -57.2 NC_001973.1 + 155203 0.69 0.714281
Target:  5'- -cGAGUUcGCucCCGAGCCCGCUCCc- -3'
miRNA:   3'- ucUUUAA-CGccGGCUCGGGCGAGGac -5'
7645 3' -57.2 NC_001973.1 + 157895 0.68 0.733975
Target:  5'- cGGAGGUcGCGGCCGccgcGCCCGCg---- -3'
miRNA:   3'- -UCUUUAaCGCCGGCu---CGGGCGaggac -5'
7645 3' -57.2 NC_001973.1 + 160835 0.68 0.762836
Target:  5'- cGGAGUcGaucaucgaGGUCGAGCCCGCUCg-- -3'
miRNA:   3'- uCUUUAaCg-------CCGGCUCGGGCGAGgac -5'
7645 3' -57.2 NC_001973.1 + 28295 0.67 0.790661
Target:  5'- ------gGCGGCCGAGCgCCGCgUCg-- -3'
miRNA:   3'- ucuuuaaCGCCGGCUCG-GGCG-AGgac -5'
7645 3' -57.2 NC_001973.1 + 77367 0.67 0.790661
Target:  5'- ------cGCGGCCGcgcGCCCGCgcgCCg- -3'
miRNA:   3'- ucuuuaaCGCCGGCu--CGGGCGa--GGac -5'
7645 3' -57.2 NC_001973.1 + 36699 0.67 0.790661
Target:  5'- ------cGCGGCCGucGUCCGCUUCg- -3'
miRNA:   3'- ucuuuaaCGCCGGCu-CGGGCGAGGac -5'
7645 3' -57.2 NC_001973.1 + 155323 0.67 0.799665
Target:  5'- ------cGCucCCGAGCCCGCUCCc- -3'
miRNA:   3'- ucuuuaaCGccGGCUCGGGCGAGGac -5'
7645 3' -57.2 NC_001973.1 + 83041 0.67 0.808517
Target:  5'- cGAGGcgGCGcGCCcgucGAGCCCGCggCCUc -3'
miRNA:   3'- uCUUUaaCGC-CGG----CUCGGGCGa-GGAc -5'
7645 3' -57.2 NC_001973.1 + 48405 0.67 0.825738
Target:  5'- ------gGC-GCUGAGCCUGCUCCa- -3'
miRNA:   3'- ucuuuaaCGcCGGCUCGGGCGAGGac -5'
7645 3' -57.2 NC_001973.1 + 45967 0.67 0.825738
Target:  5'- ------gGCGGCCGGcgcGCUCGC-CCUGc -3'
miRNA:   3'- ucuuuaaCGCCGGCU---CGGGCGaGGAC- -5'
7645 3' -57.2 NC_001973.1 + 33333 0.66 0.83409
Target:  5'- cGGGucacGUUGCGGCCGcggaugauGCCCGUgCCg- -3'
miRNA:   3'- -UCUu---UAACGCCGGCu-------CGGGCGaGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.