Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7645 | 3' | -57.2 | NC_001973.1 | + | 158824 | 0.69 | 0.674128 |
Target: 5'- uGAAGccgGCGGCCGAGCgCGCggacgagCCg- -3' miRNA: 3'- uCUUUaa-CGCCGGCUCGgGCGa------GGac -5' |
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7645 | 3' | -57.2 | NC_001973.1 | + | 121285 | 0.72 | 0.513032 |
Target: 5'- cGAAAUUcGCGGCCGucGCCCGCggcgcgcgCCg- -3' miRNA: 3'- uCUUUAA-CGCCGGCu-CGGGCGa-------GGac -5' |
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7645 | 3' | -57.2 | NC_001973.1 | + | 158683 | 0.75 | 0.386207 |
Target: 5'- cGAAGccgGCGGCCGAGCgCGCgCCUa -3' miRNA: 3'- uCUUUaa-CGCCGGCUCGgGCGaGGAc -5' |
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7645 | 3' | -57.2 | NC_001973.1 | + | 155299 | 0.75 | 0.386207 |
Target: 5'- ------cGCucCCGAGCCCGCUCCUGa -3' miRNA: 3'- ucuuuaaCGccGGCUCGGGCGAGGAC- -5' |
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7645 | 3' | -57.2 | NC_001973.1 | + | 153953 | 0.77 | 0.27533 |
Target: 5'- cGAGccUGCagacGCCGAGCCCGCUCCUu -3' miRNA: 3'- uCUUuaACGc---CGGCUCGGGCGAGGAc -5' |
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7645 | 3' | -57.2 | NC_001973.1 | + | 153914 | 0.82 | 0.137725 |
Target: 5'- cGAGccUGCagacGCCGAGCCCGCUCCUGa -3' miRNA: 3'- uCUUuaACGc---CGGCUCGGGCGAGGAC- -5' |
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7645 | 3' | -57.2 | NC_001973.1 | + | 153877 | 1.08 | 0.002314 |
Target: 5'- cAGAAAUUGCGGCCGAGCCCGCUCCUGa -3' miRNA: 3'- -UCUUUAACGCCGGCUCGGGCGAGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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