miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 132539 0.68 0.526231
Target:  5'- cGCCGGGCgCggcgGCGGGC-UCGAGCgCgGCg -3'
miRNA:   3'- -CGGCUCG-Ga---CGUCUGcGGCUCG-GgCG- -5'
7645 5' -62.1 NC_001973.1 + 80196 0.68 0.526231
Target:  5'- gGCCGAGCgC-GCAcGcCGUCGAGUggCCGCg -3'
miRNA:   3'- -CGGCUCG-GaCGU-CuGCGGCUCG--GGCG- -5'
7645 5' -62.1 NC_001973.1 + 101590 0.68 0.526231
Target:  5'- cGUCGcGCCcGUAGuaGCGCCGAauGCUCGCc -3'
miRNA:   3'- -CGGCuCGGaCGUC--UGCGGCU--CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 7249 0.68 0.516871
Target:  5'- cGUCGAGCagaUGCGcagcgggcucGGCGCgCGGcgcGCCCGCu -3'
miRNA:   3'- -CGGCUCGg--ACGU----------CUGCG-GCU---CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 34957 0.68 0.516871
Target:  5'- cGCCGAGCUgaacGCgcucacGGACGaggugugCGuGCCCGCg -3'
miRNA:   3'- -CGGCUCGGa---CG------UCUGCg------GCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 20922 0.68 0.516871
Target:  5'- cGCgCGAGCCgauUGCGuucUGUCGAGCCgGCg -3'
miRNA:   3'- -CG-GCUCGG---ACGUcu-GCGGCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 82766 0.68 0.516871
Target:  5'- cGUCGA-UCUGCAGGuCGCCGAGUUgGUc -3'
miRNA:   3'- -CGGCUcGGACGUCU-GCGGCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 59915 0.68 0.516871
Target:  5'- -gCGAGCCaGCcgcGCGCCGcGGCgCCGCa -3'
miRNA:   3'- cgGCUCGGaCGuc-UGCGGC-UCG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 143151 0.68 0.535654
Target:  5'- -gCGuGCCcGCAucGACGCCGGGCggCUGCg -3'
miRNA:   3'- cgGCuCGGaCGU--CUGCGGCUCG--GGCG- -5'
7645 5' -62.1 NC_001973.1 + 47804 0.68 0.535654
Target:  5'- cGCCG-GCCgacGCGuGCGCCaaaucGCCCGCc -3'
miRNA:   3'- -CGGCuCGGa--CGUcUGCGGcu---CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 153870 0.68 0.564253
Target:  5'- aCCG-GCU--CAGAaauugcgGCCGAGCCCGCu -3'
miRNA:   3'- cGGCuCGGacGUCUg------CGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 36766 0.68 0.564253
Target:  5'- aCCGAGCgaG-AGGCGCgCGAcgcGCUCGCa -3'
miRNA:   3'- cGGCUCGgaCgUCUGCG-GCU---CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 21641 0.68 0.564253
Target:  5'- aGCCGugcaGGCCgcGCGGcAgGCCGAGCacguagCCGCu -3'
miRNA:   3'- -CGGC----UCGGa-CGUC-UgCGGCUCG------GGCG- -5'
7645 5' -62.1 NC_001973.1 + 108434 0.68 0.564253
Target:  5'- --aGAGCgaGCGGcgcuCGCgCGAcGCCCGCa -3'
miRNA:   3'- cggCUCGgaCGUCu---GCG-GCU-CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 96417 0.68 0.55467
Target:  5'- gGCCGAuaGCgCUGCaAGAUGCCu--CCCGCc -3'
miRNA:   3'- -CGGCU--CG-GACG-UCUGCGGcucGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 39712 0.68 0.55467
Target:  5'- cGUCGAGCagcGCGGcCGCCauGUCCGCg -3'
miRNA:   3'- -CGGCUCGga-CGUCuGCGGcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 56338 0.68 0.545135
Target:  5'- cGCCGcGCUcGCGGccGCGCuCGGGCCC-Cg -3'
miRNA:   3'- -CGGCuCGGaCGUC--UGCG-GCUCGGGcG- -5'
7645 5' -62.1 NC_001973.1 + 8785 0.68 0.535654
Target:  5'- gGCCGAGCgUcaacGCGacggaacccgcGGCGCgaagacacgaCGAGCCCGCc -3'
miRNA:   3'- -CGGCUCGgA----CGU-----------CUGCG----------GCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 106828 0.68 0.535654
Target:  5'- cCCGcGCUUGCGcccGCGcCCGcGCCCGCg -3'
miRNA:   3'- cGGCuCGGACGUc--UGC-GGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 55821 0.69 0.507578
Target:  5'- cGgCGAcagagGCCUGCGGAcCGgCGAgggcgagcgcGCCCGCa -3'
miRNA:   3'- -CgGCU-----CGGACGUCU-GCgGCU----------CGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.