miRNA display CGI


Results 101 - 120 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 6409 0.7 0.426751
Target:  5'- gGCCGAGUgcgCggcgGCGGcGCGCCGAcgagcgcGCCCGUc -3'
miRNA:   3'- -CGGCUCG---Ga---CGUC-UGCGGCU-------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 140380 0.7 0.419173
Target:  5'- cGCCGAGCg-GCuGGCuCuCGAGCCgCGCg -3'
miRNA:   3'- -CGGCUCGgaCGuCUGcG-GCUCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 107887 0.7 0.418336
Target:  5'- cGCCG-GCCguugGCcGACGCCGAacugagcGCCCa- -3'
miRNA:   3'- -CGGCuCGGa---CGuCUGCGGCU-------CGGGcg -5'
7645 5' -62.1 NC_001973.1 + 151065 0.7 0.41085
Target:  5'- cUCGAGCUcgGCGGACGCguaggauccuaCGcGCCCGCc -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 89175 0.7 0.41085
Target:  5'- uCCuGGCaCUGCAGGCGCUGcgccGCCCGg -3'
miRNA:   3'- cGGcUCG-GACGUCUGCGGCu---CGGGCg -5'
7645 5' -62.1 NC_001973.1 + 48719 0.7 0.436122
Target:  5'- cGCuCGAGUCgUGCuuGCGCCGcuGCUCGCa -3'
miRNA:   3'- -CG-GCUCGG-ACGucUGCGGCu-CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 152378 0.7 0.436122
Target:  5'- aGCCGgacGGCCggcgcggGCGGGCGCgGGGCggCGCg -3'
miRNA:   3'- -CGGC---UCGGa------CGUCUGCGgCUCGg-GCG- -5'
7645 5' -62.1 NC_001973.1 + 137263 0.7 0.453459
Target:  5'- aGCCGAGUgUGCGG-CgGCgGGGCUCGg -3'
miRNA:   3'- -CGGCUCGgACGUCuG-CGgCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 133519 0.7 0.453459
Target:  5'- uGUCGGGCa-GCAGAgGCgaGGGCCgCGCg -3'
miRNA:   3'- -CGGCUCGgaCGUCUgCGg-CUCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 90094 0.7 0.453459
Target:  5'- gGCCGGcGaCUUGCcGGCGCCGAaaaGCuuGCg -3'
miRNA:   3'- -CGGCU-C-GGACGuCUGCGGCU---CGggCG- -5'
7645 5' -62.1 NC_001973.1 + 66637 0.7 0.453459
Target:  5'- --aGGGCCUGguGACGCCG-GUgCGg -3'
miRNA:   3'- cggCUCGGACguCUGCGGCuCGgGCg -5'
7645 5' -62.1 NC_001973.1 + 151909 0.7 0.452583
Target:  5'- gGCCGcgcguccuucuccAGCCggcgGCAGGCGUCGAcgcaguccuCCCGCa -3'
miRNA:   3'- -CGGC-------------UCGGa---CGUCUGCGGCUc--------GGGCG- -5'
7645 5' -62.1 NC_001973.1 + 8612 0.7 0.444743
Target:  5'- gGCCGcGCC-GCGGAcgacgcCGCCGAGgCCGa -3'
miRNA:   3'- -CGGCuCGGaCGUCU------GCGGCUCgGGCg -5'
7645 5' -62.1 NC_001973.1 + 65318 0.7 0.444743
Target:  5'- -gCGAGCgCUGCaaGGGCGCgGAGCagcaaCGCu -3'
miRNA:   3'- cgGCUCG-GACG--UCUGCGgCUCGg----GCG- -5'
7645 5' -62.1 NC_001973.1 + 24120 0.7 0.439559
Target:  5'- cGCUGAGCCgggcgagcucgcgggUGCGcGCGCC--GCCCGCc -3'
miRNA:   3'- -CGGCUCGG---------------ACGUcUGCGGcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 159377 0.71 0.394516
Target:  5'- gGUCGA-CCUGCAGGCGCCGu-CCCu- -3'
miRNA:   3'- -CGGCUcGGACGUCUGCGGCucGGGcg -5'
7645 5' -62.1 NC_001973.1 + 28717 0.71 0.394516
Target:  5'- -aUGAGCCgcgaCAGcuucuCGUCGAGCCCGCu -3'
miRNA:   3'- cgGCUCGGac--GUCu----GCGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 25709 0.71 0.40263
Target:  5'- cGCCGaAGCCuUGC--GCGCC--GCCCGCg -3'
miRNA:   3'- -CGGC-UCGG-ACGucUGCGGcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 130617 0.71 0.40263
Target:  5'- aCCGAGCUcgGCGGACGCguaggauuuuaCGuGCCgGCa -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 64627 0.71 0.386508
Target:  5'- cGCCGAGCaaaagacgGagaAGGCGCaCGAGgCCGCc -3'
miRNA:   3'- -CGGCUCGga------Cg--UCUGCG-GCUCgGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.