miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 48719 0.7 0.436122
Target:  5'- cGCuCGAGUCgUGCuuGCGCCGcuGCUCGCa -3'
miRNA:   3'- -CG-GCUCGG-ACGucUGCGGCu-CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 24120 0.7 0.439559
Target:  5'- cGCUGAGCCgggcgagcucgcgggUGCGcGCGCC--GCCCGCc -3'
miRNA:   3'- -CGGCUCGG---------------ACGUcUGCGGcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 152378 0.7 0.436122
Target:  5'- aGCCGgacGGCCggcgcggGCGGGCGCgGGGCggCGCg -3'
miRNA:   3'- -CGGC---UCGGa------CGUCUGCGgCUCGg-GCG- -5'
7645 5' -62.1 NC_001973.1 + 151065 0.7 0.41085
Target:  5'- cUCGAGCUcgGCGGACGCguaggauccuaCGcGCCCGCc -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 107887 0.7 0.418336
Target:  5'- cGCCG-GCCguugGCcGACGCCGAacugagcGCCCa- -3'
miRNA:   3'- -CGGCuCGGa---CGuCUGCGGCU-------CGGGcg -5'
7645 5' -62.1 NC_001973.1 + 137263 0.7 0.453459
Target:  5'- aGCCGAGUgUGCGG-CgGCgGGGCUCGg -3'
miRNA:   3'- -CGGCUCGgACGUCuG-CGgCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 151909 0.7 0.452583
Target:  5'- gGCCGcgcguccuucuccAGCCggcgGCAGGCGUCGAcgcaguccuCCCGCa -3'
miRNA:   3'- -CGGC-------------UCGGa---CGUCUGCGGCUc--------GGGCG- -5'
7645 5' -62.1 NC_001973.1 + 6409 0.7 0.426751
Target:  5'- gGCCGAGUgcgCggcgGCGGcGCGCCGAcgagcgcGCCCGUc -3'
miRNA:   3'- -CGGCUCG---Ga---CGUC-UGCGGCU-------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 157892 0.7 0.427598
Target:  5'- uGUCGgaGGUC-GCGGcCGCCGcGCCCGCg -3'
miRNA:   3'- -CGGC--UCGGaCGUCuGCGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 122835 0.69 0.507578
Target:  5'- aCCGAccGCCguugaUGCGcACGCUGuGCCCGCc -3'
miRNA:   3'- cGGCU--CGG-----ACGUcUGCGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 105703 0.69 0.462267
Target:  5'- cGCUGAacacggagaccGCCUGCAGGCGC--GGCgCCGUu -3'
miRNA:   3'- -CGGCU-----------CGGACGUCUGCGgcUCG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 93574 0.69 0.480147
Target:  5'- gGCCGAgGUgaGCGGuCGCguaGuGCCCGCg -3'
miRNA:   3'- -CGGCU-CGgaCGUCuGCGg--CuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 133976 0.69 0.489212
Target:  5'- uCCGAcGUCUGgguguagcCGGugGCCGuGCUCGCg -3'
miRNA:   3'- cGGCU-CGGAC--------GUCugCGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 18110 0.69 0.485576
Target:  5'- cGCgGAGCCcugguaucucaaguUGUcGGCGCCGAugcccacGCCCGUu -3'
miRNA:   3'- -CGgCUCGG--------------ACGuCUGCGGCU-------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 160494 0.69 0.489212
Target:  5'- uGCCG-GCCaggGUcgauGGAgGUCGAGCCCGa -3'
miRNA:   3'- -CGGCuCGGa--CG----UCUgCGGCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 80051 0.69 0.498358
Target:  5'- -aCGGGCUUGC--GCGCCGGGUCCu- -3'
miRNA:   3'- cgGCUCGGACGucUGCGGCUCGGGcg -5'
7645 5' -62.1 NC_001973.1 + 29954 0.69 0.507578
Target:  5'- cUCGAGCCcGUacagAGACGCCG-GCUCGg -3'
miRNA:   3'- cGGCUCGGaCG----UCUGCGGCuCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 37283 0.69 0.507578
Target:  5'- cGCCacGAGCCcGgAGACGagcccggagaCGAGCCCGg -3'
miRNA:   3'- -CGG--CUCGGaCgUCUGCg---------GCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 79980 0.69 0.498358
Target:  5'- cGCCGuuGCCggGCAGAaaGUCGAcGCCCGg -3'
miRNA:   3'- -CGGCu-CGGa-CGUCUg-CGGCU-CGGGCg -5'
7645 5' -62.1 NC_001973.1 + 64864 0.69 0.489212
Target:  5'- cGCCGucCCUGCGGGC-UCGcGCCCGa -3'
miRNA:   3'- -CGGCucGGACGUCUGcGGCuCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.