Results 81 - 100 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
7645 | 5' | -62.1 | NC_001973.1 | + | 105703 | 0.69 | 0.462267 |
Target: 5'- cGCUGAacacggagaccGCCUGCAGGCGC--GGCgCCGUu -3' miRNA: 3'- -CGGCU-----------CGGACGUCUGCGgcUCG-GGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 37367 | 0.69 | 0.507578 |
Target: 5'- cGCCacGAGCCcGgAGACGagccucgccaCGAGCCCGg -3' miRNA: 3'- -CGG--CUCGGaCgUCUGCg---------GCUCGGGCg -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 137990 | 0.69 | 0.507578 |
Target: 5'- cCCGuGCCguaaUAGGCGCCGAGCaCCa- -3' miRNA: 3'- cGGCuCGGac--GUCUGCGGCUCG-GGcg -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 138363 | 0.69 | 0.507578 |
Target: 5'- gGCCGAGCgUGCcGAaggGCaGGGCCuCGCc -3' miRNA: 3'- -CGGCUCGgACGuCUg--CGgCUCGG-GCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 55821 | 0.69 | 0.507578 |
Target: 5'- cGgCGAcagagGCCUGCGGAcCGgCGAgggcgagcgcGCCCGCa -3' miRNA: 3'- -CgGCU-----CGGACGUCU-GCgGCU----------CGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 122835 | 0.69 | 0.507578 |
Target: 5'- aCCGAccGCCguugaUGCGcACGCUGuGCCCGCc -3' miRNA: 3'- cGGCU--CGG-----ACGUcUGCGGCuCGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 18110 | 0.69 | 0.485576 |
Target: 5'- cGCgGAGCCcugguaucucaaguUGUcGGCGCCGAugcccacGCCCGUu -3' miRNA: 3'- -CGgCUCGG--------------ACGuCUGCGGCU-------CGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 132539 | 0.68 | 0.526231 |
Target: 5'- cGCCGGGCgCggcgGCGGGC-UCGAGCgCgGCg -3' miRNA: 3'- -CGGCUCG-Ga---CGUCUGcGGCUCG-GgCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 23182 | 0.68 | 0.534709 |
Target: 5'- cGCCacuGCCUGCAcgagauGACGCgcgccgaCGAGCgCGCa -3' miRNA: 3'- -CGGcu-CGGACGU------CUGCG-------GCUCGgGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 21641 | 0.68 | 0.564253 |
Target: 5'- aGCCGugcaGGCCgcGCGGcAgGCCGAGCacguagCCGCu -3' miRNA: 3'- -CGGC----UCGGa-CGUC-UgCGGCUCG------GGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 36766 | 0.68 | 0.564253 |
Target: 5'- aCCGAGCgaG-AGGCGCgCGAcgcGCUCGCa -3' miRNA: 3'- cGGCUCGgaCgUCUGCG-GCU---CGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 153870 | 0.68 | 0.564253 |
Target: 5'- aCCG-GCU--CAGAaauugcgGCCGAGCCCGCu -3' miRNA: 3'- cGGCuCGGacGUCUg------CGGCUCGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 143151 | 0.68 | 0.535654 |
Target: 5'- -gCGuGCCcGCAucGACGCCGGGCggCUGCg -3' miRNA: 3'- cgGCuCGGaCGU--CUGCGGCUCG--GGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 80196 | 0.68 | 0.526231 |
Target: 5'- gGCCGAGCgC-GCAcGcCGUCGAGUggCCGCg -3' miRNA: 3'- -CGGCUCG-GaCGU-CuGCGGCUCG--GGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 101590 | 0.68 | 0.526231 |
Target: 5'- cGUCGcGCCcGUAGuaGCGCCGAauGCUCGCc -3' miRNA: 3'- -CGGCuCGGaCGUC--UGCGGCU--CGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 7249 | 0.68 | 0.516871 |
Target: 5'- cGUCGAGCagaUGCGcagcgggcucGGCGCgCGGcgcGCCCGCu -3' miRNA: 3'- -CGGCUCGg--ACGU----------CUGCG-GCU---CGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 34957 | 0.68 | 0.516871 |
Target: 5'- cGCCGAGCUgaacGCgcucacGGACGaggugugCGuGCCCGCg -3' miRNA: 3'- -CGGCUCGGa---CG------UCUGCg------GCuCGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 108434 | 0.68 | 0.564253 |
Target: 5'- --aGAGCgaGCGGcgcuCGCgCGAcGCCCGCa -3' miRNA: 3'- cggCUCGgaCGUCu---GCG-GCU-CGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 82766 | 0.68 | 0.516871 |
Target: 5'- cGUCGA-UCUGCAGGuCGCCGAGUUgGUc -3' miRNA: 3'- -CGGCUcGGACGUCU-GCGGCUCGGgCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 59915 | 0.68 | 0.516871 |
Target: 5'- -gCGAGCCaGCcgcGCGCCGcGGCgCCGCa -3' miRNA: 3'- cgGCUCGGaCGuc-UGCGGC-UCG-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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