miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 23382 0.7 0.436122
Target:  5'- uCCGAGUacuUUGCGGGCGUgacggCGAGCgCGCa -3'
miRNA:   3'- cGGCUCG---GACGUCUGCG-----GCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 24120 0.7 0.439559
Target:  5'- cGCUGAGCCgggcgagcucgcgggUGCGcGCGCC--GCCCGCc -3'
miRNA:   3'- -CGGCUCGG---------------ACGUcUGCGGcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 8612 0.7 0.444743
Target:  5'- gGCCGcGCC-GCGGAcgacgcCGCCGAGgCCGa -3'
miRNA:   3'- -CGGCuCGGaCGUCU------GCGGCUCgGGCg -5'
7645 5' -62.1 NC_001973.1 + 65318 0.7 0.444743
Target:  5'- -gCGAGCgCUGCaaGGGCGCgGAGCagcaaCGCu -3'
miRNA:   3'- cgGCUCG-GACG--UCUGCGgCUCGg----GCG- -5'
7645 5' -62.1 NC_001973.1 + 151909 0.7 0.452583
Target:  5'- gGCCGcgcguccuucuccAGCCggcgGCAGGCGUCGAcgcaguccuCCCGCa -3'
miRNA:   3'- -CGGC-------------UCGGa---CGUCUGCGGCUc--------GGGCG- -5'
7645 5' -62.1 NC_001973.1 + 66637 0.7 0.453459
Target:  5'- --aGGGCCUGguGACGCCG-GUgCGg -3'
miRNA:   3'- cggCUCGGACguCUGCGGCuCGgGCg -5'
7645 5' -62.1 NC_001973.1 + 90094 0.7 0.453459
Target:  5'- gGCCGGcGaCUUGCcGGCGCCGAaaaGCuuGCg -3'
miRNA:   3'- -CGGCU-C-GGACGuCUGCGGCU---CGggCG- -5'
7645 5' -62.1 NC_001973.1 + 133519 0.7 0.453459
Target:  5'- uGUCGGGCa-GCAGAgGCgaGGGCCgCGCg -3'
miRNA:   3'- -CGGCUCGgaCGUCUgCGg-CUCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 137263 0.7 0.453459
Target:  5'- aGCCGAGUgUGCGG-CgGCgGGGCUCGg -3'
miRNA:   3'- -CGGCUCGgACGUCuG-CGgCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 105703 0.69 0.462267
Target:  5'- cGCUGAacacggagaccGCCUGCAGGCGC--GGCgCCGUu -3'
miRNA:   3'- -CGGCU-----------CGGACGUCUGCGgcUCG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 160832 0.69 0.462267
Target:  5'- gGCCgGAGUCgauCAucGAgGUCGAGCCCGCu -3'
miRNA:   3'- -CGG-CUCGGac-GU--CUgCGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 93574 0.69 0.480147
Target:  5'- gGCCGAgGUgaGCGGuCGCguaGuGCCCGCg -3'
miRNA:   3'- -CGGCU-CGgaCGUCuGCGg--CuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 18110 0.69 0.485576
Target:  5'- cGCgGAGCCcugguaucucaaguUGUcGGCGCCGAugcccacGCCCGUu -3'
miRNA:   3'- -CGgCUCGG--------------ACGuCUGCGGCU-------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 133976 0.69 0.489212
Target:  5'- uCCGAcGUCUGgguguagcCGGugGCCGuGCUCGCg -3'
miRNA:   3'- cGGCU-CGGAC--------GUCugCGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 64864 0.69 0.489212
Target:  5'- cGCCGucCCUGCGGGC-UCGcGCCCGa -3'
miRNA:   3'- -CGGCucGGACGUCUGcGGCuCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 160494 0.69 0.489212
Target:  5'- uGCCG-GCCaggGUcgauGGAgGUCGAGCCCGa -3'
miRNA:   3'- -CGGCuCGGa--CG----UCUgCGGCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 80051 0.69 0.498358
Target:  5'- -aCGGGCUUGC--GCGCCGGGUCCu- -3'
miRNA:   3'- cgGCUCGGACGucUGCGGCUCGGGcg -5'
7645 5' -62.1 NC_001973.1 + 79980 0.69 0.498358
Target:  5'- cGCCGuuGCCggGCAGAaaGUCGAcGCCCGg -3'
miRNA:   3'- -CGGCu-CGGa-CGUCUg-CGGCU-CGGGCg -5'
7645 5' -62.1 NC_001973.1 + 22983 0.69 0.507578
Target:  5'- cGCCGAcGCCgacGCcGACGCCGA-CgUGCa -3'
miRNA:   3'- -CGGCU-CGGa--CGuCUGCGGCUcGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 37283 0.69 0.507578
Target:  5'- cGCCacGAGCCcGgAGACGagcccggagaCGAGCCCGg -3'
miRNA:   3'- -CGG--CUCGGaCgUCUGCg---------GCUCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.