miRNA display CGI


Results 81 - 100 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 80196 0.68 0.526231
Target:  5'- gGCCGAGCgC-GCAcGcCGUCGAGUggCCGCg -3'
miRNA:   3'- -CGGCUCG-GaCGU-CuGCGGCUCG--GGCG- -5'
7645 5' -62.1 NC_001973.1 + 81657 0.66 0.641979
Target:  5'- gGCCG-GCCcGCAcagcuuguuCGCCcGGCCCGUg -3'
miRNA:   3'- -CGGCuCGGaCGUcu-------GCGGcUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 82481 0.66 0.651733
Target:  5'- cGCCG-GCCcgaUGgAGACGCgCGccuuGCCgGCg -3'
miRNA:   3'- -CGGCuCGG---ACgUCUGCG-GCu---CGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 82519 0.66 0.632218
Target:  5'- gGCCG-GCCUGCAGuuggguuuuuaACGCCGA-CCa-- -3'
miRNA:   3'- -CGGCuCGGACGUC-----------UGCGGCUcGGgcg -5'
7645 5' -62.1 NC_001973.1 + 82766 0.68 0.516871
Target:  5'- cGUCGA-UCUGCAGGuCGCCGAGUUgGUc -3'
miRNA:   3'- -CGGCUcGGACGUCU-GCGGCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 83034 0.72 0.333529
Target:  5'- cGgCGGGCgagGCGGcGCGCCcgucGAGCCCGCg -3'
miRNA:   3'- -CgGCUCGga-CGUC-UGCGG----CUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 84162 0.67 0.593239
Target:  5'- gGCCGAGgCggagaGCGGcgcCGCCGA-CCUGCa -3'
miRNA:   3'- -CGGCUCgGa----CGUCu--GCGGCUcGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 86975 0.66 0.651733
Target:  5'- cGCCccGCCcGCGG-CGCCGuccGCcCCGCc -3'
miRNA:   3'- -CGGcuCGGaCGUCuGCGGCu--CG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 87120 0.66 0.690535
Target:  5'- uGCgCG-GCgUGCGcGCGCCGGuGCgCCGCc -3'
miRNA:   3'- -CG-GCuCGgACGUcUGCGGCU-CG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 89022 0.66 0.680882
Target:  5'- cGCCGGGCCUaaaGUAGGaGgCGAuCUCGCg -3'
miRNA:   3'- -CGGCUCGGA---CGUCUgCgGCUcGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 89104 0.67 0.616603
Target:  5'- cGUCGAGCUccGCGGgcGCGCucuccuccucccaauCGAGCUCGCc -3'
miRNA:   3'- -CGGCUCGGa-CGUC--UGCG---------------GCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 89175 0.7 0.41085
Target:  5'- uCCuGGCaCUGCAGGCGCUGcgccGCCCGg -3'
miRNA:   3'- cGGcUCG-GACGUCUGCGGCu---CGGGCg -5'
7645 5' -62.1 NC_001973.1 + 90094 0.7 0.453459
Target:  5'- gGCCGGcGaCUUGCcGGCGCCGAaaaGCuuGCg -3'
miRNA:   3'- -CGGCU-C-GGACGuCUGCGGCU---CGggCG- -5'
7645 5' -62.1 NC_001973.1 + 93574 0.69 0.480147
Target:  5'- gGCCGAgGUgaGCGGuCGCguaGuGCCCGCg -3'
miRNA:   3'- -CGGCU-CGgaCGUCuGCGg--CuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 95340 0.66 0.680882
Target:  5'- cGCgCGAGUuuCUGCAGACGUgGAagcuguucgacgGCCUGg -3'
miRNA:   3'- -CG-GCUCG--GACGUCUGCGgCU------------CGGGCg -5'
7645 5' -62.1 NC_001973.1 + 95652 0.66 0.650758
Target:  5'- aGCUGGGCCaccagaccgcgcUGUAcGCGCCGucguggcGGCCCGa -3'
miRNA:   3'- -CGGCUCGG------------ACGUcUGCGGC-------UCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 96111 0.66 0.671192
Target:  5'- cGCCG-GCCUGaa---GCCG-GCCgCGCg -3'
miRNA:   3'- -CGGCuCGGACgucugCGGCuCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 96417 0.68 0.55467
Target:  5'- gGCCGAuaGCgCUGCaAGAUGCCu--CCCGCc -3'
miRNA:   3'- -CGGCU--CG-GACG-UCUGCGGcucGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 98060 0.66 0.651733
Target:  5'- --aGAGCgC-GUAGugGCCGuAGCCgCGCu -3'
miRNA:   3'- cggCUCG-GaCGUCugCGGC-UCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 101590 0.68 0.526231
Target:  5'- cGUCGcGCCcGUAGuaGCGCCGAauGCUCGCc -3'
miRNA:   3'- -CGGCuCGGaCGUC--UGCGGCU--CGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.