Results 101 - 120 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7645 | 5' | -62.1 | NC_001973.1 | + | 104147 | 0.67 | 0.583543 |
Target: 5'- -aCGAGCaCgagGCGGugGaUCGGGCCgGCc -3' miRNA: 3'- cgGCUCG-Ga--CGUCugC-GGCUCGGgCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 104747 | 0.66 | 0.690535 |
Target: 5'- cGUCGcGCacucgGCGGACGCCccGCCgCGCc -3' miRNA: 3'- -CGGCuCGga---CGUCUGCGGcuCGG-GCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 105703 | 0.69 | 0.462267 |
Target: 5'- cGCUGAacacggagaccGCCUGCAGGCGC--GGCgCCGUu -3' miRNA: 3'- -CGGCU-----------CGGACGUCUGCGgcUCG-GGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 105894 | 0.71 | 0.381754 |
Target: 5'- cGCCGAGCUgGCGcucgcccgccucgucGAUGCCGAaaaacucuucGUCCGCg -3' miRNA: 3'- -CGGCUCGGaCGU---------------CUGCGGCU----------CGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 106413 | 0.66 | 0.661473 |
Target: 5'- uUCGuGCg-GCGcGACGCCGAGCgCgGCg -3' miRNA: 3'- cGGCuCGgaCGU-CUGCGGCUCG-GgCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 106828 | 0.68 | 0.535654 |
Target: 5'- cCCGcGCUUGCGcccGCGcCCGcGCCCGCg -3' miRNA: 3'- cGGCuCGGACGUc--UGC-GGCuCGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 106936 | 0.66 | 0.690535 |
Target: 5'- uCCGuGCCcGCguugaauuucAGcGCGCCGGGCgCGCu -3' miRNA: 3'- cGGCuCGGaCG----------UC-UGCGGCUCGgGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 107887 | 0.7 | 0.418336 |
Target: 5'- cGCCG-GCCguugGCcGACGCCGAacugagcGCCCa- -3' miRNA: 3'- -CGGCuCGGa---CGuCUGCGGCU-------CGGGcg -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 108434 | 0.68 | 0.564253 |
Target: 5'- --aGAGCgaGCGGcgcuCGCgCGAcGCCCGCa -3' miRNA: 3'- cggCUCGgaCGUCu---GCG-GCU-CGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 109160 | 0.71 | 0.362373 |
Target: 5'- aGCCGGGCgaGCcGGucgcccgcgcgcuCGCCGAGCgCGCc -3' miRNA: 3'- -CGGCUCGgaCGuCU-------------GCGGCUCGgGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 114426 | 0.72 | 0.319403 |
Target: 5'- -gCGAGCCUGCGcGCgaGCCG-GCUCGCg -3' miRNA: 3'- cgGCUCGGACGUcUG--CGGCuCGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 119185 | 0.66 | 0.661473 |
Target: 5'- cGUCGAGCC----GACGCCGAagaagcgcggcgGCUCGCc -3' miRNA: 3'- -CGGCUCGGacguCUGCGGCU------------CGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 119452 | 0.73 | 0.286071 |
Target: 5'- cGCCGcGCCcGCcgccgccGcCGCCGAGCCCGUc -3' miRNA: 3'- -CGGCuCGGaCGu------CuGCGGCUCGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 120573 | 0.66 | 0.6605 |
Target: 5'- uGUCGGGCgUGCuaucacgGGcGCGCCGAG-UCGCg -3' miRNA: 3'- -CGGCUCGgACG-------UC-UGCGGCUCgGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 120826 | 0.8 | 0.104656 |
Target: 5'- cGCCGuGCCcGCGGACGCgGAcGCCgCGCa -3' miRNA: 3'- -CGGCuCGGaCGUCUGCGgCU-CGG-GCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 121295 | 0.66 | 0.680882 |
Target: 5'- gGCCGucGCCcGCGGcgcGCGCCG-GCggaCGCg -3' miRNA: 3'- -CGGCu-CGGaCGUC---UGCGGCuCGg--GCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 122835 | 0.69 | 0.507578 |
Target: 5'- aCCGAccGCCguugaUGCGcACGCUGuGCCCGCc -3' miRNA: 3'- cGGCU--CGG-----ACGUcUGCGGCuCGGGCG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 124678 | 0.66 | 0.665364 |
Target: 5'- cGCCGcGGCUacaauugccccgagGCGGugGCCGAGCUguacgGCa -3' miRNA: 3'- -CGGC-UCGGa-------------CGUCugCGGCUCGGg----CG- -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 126093 | 0.74 | 0.261427 |
Target: 5'- aGCCcgaGAGCgUGCcGACGCgUGAGCCCGg -3' miRNA: 3'- -CGG---CUCGgACGuCUGCG-GCUCGGGCg -5' |
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7645 | 5' | -62.1 | NC_001973.1 | + | 126536 | 0.66 | 0.690535 |
Target: 5'- gGCCGAucucgcacacgGCCaGCGuguGGCGCagccgCGGGUCCGCg -3' miRNA: 3'- -CGGCU-----------CGGaCGU---CUGCG-----GCUCGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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