miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 132539 0.68 0.526231
Target:  5'- cGCCGGGCgCggcgGCGGGC-UCGAGCgCgGCg -3'
miRNA:   3'- -CGGCUCG-Ga---CGUCUGcGGCUCG-GgCG- -5'
7645 5' -62.1 NC_001973.1 + 130617 0.71 0.40263
Target:  5'- aCCGAGCUcgGCGGACGCguaggauuuuaCGuGCCgGCa -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 128574 0.66 0.641003
Target:  5'- cGCCG-GCaucucGCuGGCGCUGAucagcucgaacacGCCCGCu -3'
miRNA:   3'- -CGGCuCGga---CGuCUGCGGCU-------------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 127511 0.66 0.661473
Target:  5'- aCUGAGCUcgGCGGGCGCguaggauuuuaCGuGCCgGCa -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 127433 0.67 0.593239
Target:  5'- cUCGAGCUcgGCGGACGCguaagauuuuaCGuGCCgGCa -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 127355 0.67 0.602961
Target:  5'- aCUGAGCUcgGCGGACGCguaagauuuuaCGuGCCgGCa -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 126536 0.66 0.690535
Target:  5'- gGCCGAucucgcacacgGCCaGCGuguGGCGCagccgCGGGUCCGCg -3'
miRNA:   3'- -CGGCU-----------CGGaCGU---CUGCG-----GCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 126093 0.74 0.261427
Target:  5'- aGCCcgaGAGCgUGCcGACGCgUGAGCCCGg -3'
miRNA:   3'- -CGG---CUCGgACGuCUGCG-GCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 124678 0.66 0.665364
Target:  5'- cGCCGcGGCUacaauugccccgagGCGGugGCCGAGCUguacgGCa -3'
miRNA:   3'- -CGGC-UCGGa-------------CGUCugCGGCUCGGg----CG- -5'
7645 5' -62.1 NC_001973.1 + 122835 0.69 0.507578
Target:  5'- aCCGAccGCCguugaUGCGcACGCUGuGCCCGCc -3'
miRNA:   3'- cGGCU--CGG-----ACGUcUGCGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 121295 0.66 0.680882
Target:  5'- gGCCGucGCCcGCGGcgcGCGCCG-GCggaCGCg -3'
miRNA:   3'- -CGGCu-CGGaCGUC---UGCGGCuCGg--GCG- -5'
7645 5' -62.1 NC_001973.1 + 120826 0.8 0.104656
Target:  5'- cGCCGuGCCcGCGGACGCgGAcGCCgCGCa -3'
miRNA:   3'- -CGGCuCGGaCGUCUGCGgCU-CGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 120573 0.66 0.6605
Target:  5'- uGUCGGGCgUGCuaucacgGGcGCGCCGAG-UCGCg -3'
miRNA:   3'- -CGGCUCGgACG-------UC-UGCGGCUCgGGCG- -5'
7645 5' -62.1 NC_001973.1 + 119452 0.73 0.286071
Target:  5'- cGCCGcGCCcGCcgccgccGcCGCCGAGCCCGUc -3'
miRNA:   3'- -CGGCuCGGaCGu------CuGCGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 119185 0.66 0.661473
Target:  5'- cGUCGAGCC----GACGCCGAagaagcgcggcgGCUCGCc -3'
miRNA:   3'- -CGGCUCGGacguCUGCGGCU------------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 114426 0.72 0.319403
Target:  5'- -gCGAGCCUGCGcGCgaGCCG-GCUCGCg -3'
miRNA:   3'- cgGCUCGGACGUcUG--CGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 109160 0.71 0.362373
Target:  5'- aGCCGGGCgaGCcGGucgcccgcgcgcuCGCCGAGCgCGCc -3'
miRNA:   3'- -CGGCUCGgaCGuCU-------------GCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 108434 0.68 0.564253
Target:  5'- --aGAGCgaGCGGcgcuCGCgCGAcGCCCGCa -3'
miRNA:   3'- cggCUCGgaCGUCu---GCG-GCU-CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 107887 0.7 0.418336
Target:  5'- cGCCG-GCCguugGCcGACGCCGAacugagcGCCCa- -3'
miRNA:   3'- -CGGCuCGGa---CGuCUGCGGCU-------CGGGcg -5'
7645 5' -62.1 NC_001973.1 + 106936 0.66 0.690535
Target:  5'- uCCGuGCCcGCguugaauuucAGcGCGCCGGGCgCGCu -3'
miRNA:   3'- cGGCuCGGaCG----------UC-UGCGGCUCGgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.