miRNA display CGI


Results 81 - 100 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 83034 0.72 0.333529
Target:  5'- cGgCGGGCgagGCGGcGCGCCcgucGAGCCCGCg -3'
miRNA:   3'- -CgGCUCGga-CGUC-UGCGG----CUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 82766 0.68 0.516871
Target:  5'- cGUCGA-UCUGCAGGuCGCCGAGUUgGUc -3'
miRNA:   3'- -CGGCUcGGACGUCU-GCGGCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 82519 0.66 0.632218
Target:  5'- gGCCG-GCCUGCAGuuggguuuuuaACGCCGA-CCa-- -3'
miRNA:   3'- -CGGCuCGGACGUC-----------UGCGGCUcGGgcg -5'
7645 5' -62.1 NC_001973.1 + 82481 0.66 0.651733
Target:  5'- cGCCG-GCCcgaUGgAGACGCgCGccuuGCCgGCg -3'
miRNA:   3'- -CGGCuCGG---ACgUCUGCG-GCu---CGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 81657 0.66 0.641979
Target:  5'- gGCCG-GCCcGCAcagcuuguuCGCCcGGCCCGUg -3'
miRNA:   3'- -CGGCuCGGaCGUcu-------GCGGcUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 80196 0.68 0.526231
Target:  5'- gGCCGAGCgC-GCAcGcCGUCGAGUggCCGCg -3'
miRNA:   3'- -CGGCUCG-GaCGU-CuGCGGCUCG--GGCG- -5'
7645 5' -62.1 NC_001973.1 + 80051 0.69 0.498358
Target:  5'- -aCGGGCUUGC--GCGCCGGGUCCu- -3'
miRNA:   3'- cgGCUCGGACGucUGCGGCUCGGGcg -5'
7645 5' -62.1 NC_001973.1 + 79980 0.69 0.498358
Target:  5'- cGCCGuuGCCggGCAGAaaGUCGAcGCCCGg -3'
miRNA:   3'- -CGGCu-CGGa-CGUCUg-CGGCU-CGGGCg -5'
7645 5' -62.1 NC_001973.1 + 79697 0.66 0.651733
Target:  5'- uGCCGAuuuGCCgGCuuuGGCGCguCGGGUCgGCa -3'
miRNA:   3'- -CGGCU---CGGaCGu--CUGCG--GCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 78611 0.73 0.279743
Target:  5'- -aCGAGUCcGCGGACGaCGAGgCCGCg -3'
miRNA:   3'- cgGCUCGGaCGUCUGCgGCUCgGGCG- -5'
7645 5' -62.1 NC_001973.1 + 76200 0.73 0.273527
Target:  5'- -gCGAGCaucaUGCAGu--CCGAGCCCGCu -3'
miRNA:   3'- cgGCUCGg---ACGUCugcGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 72285 0.71 0.378607
Target:  5'- cUCGAGCUcgGCGGACGCguaagauuuuaCGcGCCCGCu -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 72206 0.66 0.661473
Target:  5'- aGuuGAGCUcgGCGGACGCguaagauuuuaCGuGCCgGCc -3'
miRNA:   3'- -CggCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 71737 0.72 0.340762
Target:  5'- cCCGGcGCCcGCGGccgccccggccGCGCCGGGCcCCGCc -3'
miRNA:   3'- cGGCU-CGGaCGUC-----------UGCGGCUCG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 70359 0.66 0.632218
Target:  5'- -aCGGGCgaGCGGcCGCUGGGUCgGUa -3'
miRNA:   3'- cgGCUCGgaCGUCuGCGGCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 70135 0.66 0.651733
Target:  5'- uGUCGAGCauggugcGCAGcGCGuCCGcGUCCGCg -3'
miRNA:   3'- -CGGCUCGga-----CGUC-UGC-GGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 68357 0.74 0.267422
Target:  5'- cGUCGGGCUUGUcguuuuGGAUGCCG-GCCgGCa -3'
miRNA:   3'- -CGGCUCGGACG------UCUGCGGCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 66637 0.7 0.453459
Target:  5'- --aGGGCCUGguGACGCCG-GUgCGg -3'
miRNA:   3'- cggCUCGGACguCUGCGGCuCGgGCg -5'
7645 5' -62.1 NC_001973.1 + 65606 0.67 0.622457
Target:  5'- cGUCGcGCCUcuaCAGcgacgcgcuaGCGCCGAGCgCGCu -3'
miRNA:   3'- -CGGCuCGGAc--GUC----------UGCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 65318 0.7 0.444743
Target:  5'- -gCGAGCgCUGCaaGGGCGCgGAGCagcaaCGCu -3'
miRNA:   3'- cgGCUCG-GACG--UCUGCGgCUCGg----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.