miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7646 3' -61.2 NC_001973.1 + 37093 0.66 0.745582
Target:  5'- gAGGACCGcCGCCgAGCCGacUCUGcuUCg -3'
miRNA:   3'- -UCCUGGCuGCGGgUUGGCccAGGC--AG- -5'
7646 3' -61.2 NC_001973.1 + 76719 0.66 0.745582
Target:  5'- cAGGccACCGugcCGUCCAACauacagaGGG-CCGUCg -3'
miRNA:   3'- -UCC--UGGCu--GCGGGUUGg------CCCaGGCAG- -5'
7646 3' -61.2 NC_001973.1 + 36323 0.66 0.745582
Target:  5'- -cGGCCGACGCggCCGACgCGGG-CC-UCg -3'
miRNA:   3'- ucCUGGCUGCG--GGUUG-GCCCaGGcAG- -5'
7646 3' -61.2 NC_001973.1 + 111072 0.66 0.717468
Target:  5'- --aACgCGGCGCCCGACgUGGGcCgCGUCg -3'
miRNA:   3'- uccUG-GCUGCGGGUUG-GCCCaG-GCAG- -5'
7646 3' -61.2 NC_001973.1 + 18136 0.66 0.717468
Target:  5'- cGGcGCCGAUGCCCAcGCCcGuUCCGUUc -3'
miRNA:   3'- uCC-UGGCUGCGGGU-UGGcCcAGGCAG- -5'
7646 3' -61.2 NC_001973.1 + 84289 0.66 0.707953
Target:  5'- gAGGACCucgaacGGCGCaCGGCCGcGUCCGcCg -3'
miRNA:   3'- -UCCUGG------CUGCGgGUUGGCcCAGGCaG- -5'
7646 3' -61.2 NC_001973.1 + 146063 0.66 0.69838
Target:  5'- uGGGCCGcgGCGCCgAGCCGGcUCgGg- -3'
miRNA:   3'- uCCUGGC--UGCGGgUUGGCCcAGgCag -5'
7646 3' -61.2 NC_001973.1 + 128139 0.66 0.69838
Target:  5'- cAGG-CUGugGCaCAGCCgcGGGUCCGa- -3'
miRNA:   3'- -UCCuGGCugCGgGUUGG--CCCAGGCag -5'
7646 3' -61.2 NC_001973.1 + 20101 0.66 0.69838
Target:  5'- cAGG-CUGugGCaCAGCCgcGGGUCCGa- -3'
miRNA:   3'- -UCCuGGCugCGgGUUGG--CCCAGGCag -5'
7646 3' -61.2 NC_001973.1 + 151369 0.66 0.688755
Target:  5'- uAGGAUCuuACGCgUCGGCCGGGgUCGUCu -3'
miRNA:   3'- -UCCUGGc-UGCG-GGUUGGCCCaGGCAG- -5'
7646 3' -61.2 NC_001973.1 + 7267 0.66 0.68779
Target:  5'- cGGGCuCGgcgcgcggcGCGCCCGcuACCGGGUCaagcacaccgcgcUGUCg -3'
miRNA:   3'- uCCUG-GC---------UGCGGGU--UGGCCCAG-------------GCAG- -5'
7646 3' -61.2 NC_001973.1 + 121378 0.66 0.686825
Target:  5'- uGGGCCGacGCGCCCGucACCGGGaacagcacgcgaUCGUUg -3'
miRNA:   3'- uCCUGGC--UGCGGGU--UGGCCCa-----------GGCAG- -5'
7646 3' -61.2 NC_001973.1 + 151084 0.67 0.669386
Target:  5'- uAGGAUCcuacGCGCCC-GCCGGGgUCGUUu -3'
miRNA:   3'- -UCCUGGc---UGCGGGuUGGCCCaGGCAG- -5'
7646 3' -61.2 NC_001973.1 + 124806 0.67 0.649906
Target:  5'- gAGGGCCGGgGCCuCGAUCGGa-CgGUCg -3'
miRNA:   3'- -UCCUGGCUgCGG-GUUGGCCcaGgCAG- -5'
7646 3' -61.2 NC_001973.1 + 122622 0.67 0.640144
Target:  5'- cGGcGCCGACGCgggcGCCGGcGUCgGUCg -3'
miRNA:   3'- uCC-UGGCUGCGggu-UGGCC-CAGgCAG- -5'
7646 3' -61.2 NC_001973.1 + 4888 0.68 0.610849
Target:  5'- aAGGGCa-GCGCgUAcGCCGGGUUCGUUa -3'
miRNA:   3'- -UCCUGgcUGCGgGU-UGGCCCAGGCAG- -5'
7646 3' -61.2 NC_001973.1 + 21272 0.68 0.59138
Target:  5'- cGaGCCGcgGCGUCC-GCCGGG-CCGUCg -3'
miRNA:   3'- uCcUGGC--UGCGGGuUGGCCCaGGCAG- -5'
7646 3' -61.2 NC_001973.1 + 103960 0.69 0.552814
Target:  5'- cGGcGCCaGCaGCCUAGCCGGGgcgugCCGUUg -3'
miRNA:   3'- uCC-UGGcUG-CGGGUUGGCCCa----GGCAG- -5'
7646 3' -61.2 NC_001973.1 + 104011 0.72 0.360783
Target:  5'- cGGGCCGucgacucgcgGCGCCagcaaccUAGCCGGG-CCGUCg -3'
miRNA:   3'- uCCUGGC----------UGCGG-------GUUGGCCCaGGCAG- -5'
7646 3' -61.2 NC_001973.1 + 153426 1.09 0.00114
Target:  5'- cAGGACCGACGCCCAACCGGGUCCGUCg -3'
miRNA:   3'- -UCCUGGCUGCGGGUUGGCCCAGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.