miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7646 5' -54.5 NC_001973.1 + 86872 0.66 0.962077
Target:  5'- gCGG-CA--UGGUCGUCGuGaagcugcagcGCGGCGACg -3'
miRNA:   3'- -GCCuGUuuGCCAGCAGC-C----------UGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 152331 0.66 0.962077
Target:  5'- uGGAC--GCGGUgCG-CGGGCGG-GGCg -3'
miRNA:   3'- gCCUGuuUGCCA-GCaGCCUGUCgCUG- -5'
7646 5' -54.5 NC_001973.1 + 95072 0.66 0.963432
Target:  5'- gCGGGCAgcuucgaggcgcugcAGCGcUCGUgcgCGGGCcGCGACg -3'
miRNA:   3'- -GCCUGU---------------UUGCcAGCA---GCCUGuCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 144339 0.66 0.965401
Target:  5'- cCGGGCAAGCGGaugCGcgaGGACgAG-GACg -3'
miRNA:   3'- -GCCUGUUUGCCa--GCag-CCUG-UCgCUG- -5'
7646 5' -54.5 NC_001973.1 + 151888 0.66 0.965401
Target:  5'- aGGACGuACGGcUCGuucUCGGGCcGCG-Cg -3'
miRNA:   3'- gCCUGUuUGCC-AGC---AGCCUGuCGCuG- -5'
7646 5' -54.5 NC_001973.1 + 123428 0.66 0.954779
Target:  5'- cCGGuGCAcGCGGUCGUC----AGCGGCa -3'
miRNA:   3'- -GCC-UGUuUGCCAGCAGccugUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 54038 0.66 0.954779
Target:  5'- uCGGGCA---GGUUGUUGGGCAcGgGGCc -3'
miRNA:   3'- -GCCUGUuugCCAGCAGCCUGU-CgCUG- -5'
7646 5' -54.5 NC_001973.1 + 104144 0.68 0.914102
Target:  5'- aGGACGAgcacgagGCGGUgGaUCGGGCcggccgaaaacgcaAGCGGCc -3'
miRNA:   3'- gCCUGUU-------UGCCAgC-AGCCUG--------------UCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 50087 0.68 0.922032
Target:  5'- gGGGC-GGCGG-CGccaCGGAgGGCGGCg -3'
miRNA:   3'- gCCUGuUUGCCaGCa--GCCUgUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 146507 0.68 0.922032
Target:  5'- -uGGCccGCGGgaUCGUCGGGCAGCa-- -3'
miRNA:   3'- gcCUGuuUGCC--AGCAGCCUGUCGcug -5'
7646 5' -54.5 NC_001973.1 + 9761 0.67 0.937468
Target:  5'- aCGGAUAGGCGaUCGUUuuAUAGCGGCc -3'
miRNA:   3'- -GCCUGUUUGCcAGCAGccUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 28202 0.67 0.937468
Target:  5'- uGGAgcaAAACGaGUCGgccacccCGGAgCGGCGACa -3'
miRNA:   3'- gCCUg--UUUGC-CAGCa------GCCU-GUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 44467 0.67 0.937468
Target:  5'- gGGAuCGAACGGgcgcUCGggcgCGGGCAuCGGCg -3'
miRNA:   3'- gCCU-GUUUGCC----AGCa---GCCUGUcGCUG- -5'
7646 5' -54.5 NC_001973.1 + 134788 0.67 0.937468
Target:  5'- cCGGuCGAuGCGGcCGUCGGcgugguGCcGCGACa -3'
miRNA:   3'- -GCCuGUU-UGCCaGCAGCC------UGuCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 44434 0.67 0.942143
Target:  5'- gGGAuCGAACGGgCGcUCGGGC-GCGGg -3'
miRNA:   3'- gCCU-GUUUGCCaGC-AGCCUGuCGCUg -5'
7646 5' -54.5 NC_001973.1 + 44674 0.67 0.942143
Target:  5'- uCGGugAGGCGGcUCGUggaGGcCGGUGAUc -3'
miRNA:   3'- -GCCugUUUGCC-AGCAg--CCuGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 55412 0.67 0.942143
Target:  5'- -cGAaaacGACGGuuUCGUCGG-CGGCGGCg -3'
miRNA:   3'- gcCUgu--UUGCC--AGCAGCCuGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 101195 0.67 0.942143
Target:  5'- cCGGGCGAAauUGGcgCG-CGGGCGGCG-Cu -3'
miRNA:   3'- -GCCUGUUU--GCCa-GCaGCCUGUCGCuG- -5'
7646 5' -54.5 NC_001973.1 + 96610 0.67 0.946151
Target:  5'- gCGGACGcgcACGGcuaccugUCG-CGGcCGGCGGCg -3'
miRNA:   3'- -GCCUGUu--UGCC-------AGCaGCCuGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 63627 0.66 0.950796
Target:  5'- aCGGcCAAAuCGGccgCGUgGGGCGGCG-Cg -3'
miRNA:   3'- -GCCuGUUU-GCCa--GCAgCCUGUCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.