miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7647 3' -56.1 NC_001973.1 + 70731 0.66 0.926299
Target:  5'- gAUUCCGACgacauugaCGaGCAGGACGaagucAUGGCa -3'
miRNA:   3'- -UGAGGCUGg-------GCaUGUCCUGCa----UGCCG- -5'
7647 3' -56.1 NC_001973.1 + 89557 0.67 0.909515
Target:  5'- cGC-CCGAuCCUGUAUAGGuuucgcucGCGguucaGCGGCg -3'
miRNA:   3'- -UGaGGCU-GGGCAUGUCC--------UGCa----UGCCG- -5'
7647 3' -56.1 NC_001973.1 + 91415 0.71 0.683088
Target:  5'- uACUUCaugCCGUACAuGACGUGCGGCc -3'
miRNA:   3'- -UGAGGcugGGCAUGUcCUGCAUGCCG- -5'
7647 3' -56.1 NC_001973.1 + 95018 0.67 0.903463
Target:  5'- gGCUUCGugCCGaugUGCGGcGGgG-ACGGCa -3'
miRNA:   3'- -UGAGGCugGGC---AUGUC-CUgCaUGCCG- -5'
7647 3' -56.1 NC_001973.1 + 95499 0.66 0.926299
Target:  5'- uGCaggCCGAgaCCa-ACAGGACGUACGaGCu -3'
miRNA:   3'- -UGa--GGCUg-GGcaUGUCCUGCAUGC-CG- -5'
7647 3' -56.1 NC_001973.1 + 100895 0.66 0.936338
Target:  5'- gACUuuGACCCuGUugugcgACAGGAUGUAgcuguugagacUGGUg -3'
miRNA:   3'- -UGAggCUGGG-CA------UGUCCUGCAU-----------GCCG- -5'
7647 3' -56.1 NC_001973.1 + 108878 0.68 0.831196
Target:  5'- gACUCCGugagaucgcucACCgCGUACAGGuCGUcgcuuuUGGCg -3'
miRNA:   3'- -UGAGGC-----------UGG-GCAUGUCCuGCAu-----GCCG- -5'
7647 3' -56.1 NC_001973.1 + 120302 0.67 0.877034
Target:  5'- uAUUCCaaggcgaaugGugUCGUGCGGaGACG-ACGGCg -3'
miRNA:   3'- -UGAGG----------CugGGCAUGUC-CUGCaUGCCG- -5'
7647 3' -56.1 NC_001973.1 + 138686 0.66 0.931434
Target:  5'- aGCUCCaucacgucuUCCGcggACAGGccuGCGUGCGGUg -3'
miRNA:   3'- -UGAGGcu-------GGGCa--UGUCC---UGCAUGCCG- -5'
7647 3' -56.1 NC_001973.1 + 144438 0.67 0.903463
Target:  5'- uACUCCGccgaggacgcGCgCGUGuCGGGcgGCGUGCGGg -3'
miRNA:   3'- -UGAGGC----------UGgGCAU-GUCC--UGCAUGCCg -5'
7647 3' -56.1 NC_001973.1 + 146503 0.67 0.897186
Target:  5'- cCUCUGGCCC--GCGGGAuCGUcgGGCa -3'
miRNA:   3'- uGAGGCUGGGcaUGUCCU-GCAugCCG- -5'
7647 3' -56.1 NC_001973.1 + 151873 1.11 0.002668
Target:  5'- aACUCCGACCCGUACAGGACGUACGGCu -3'
miRNA:   3'- -UGAGGCUGGGCAUGUCCUGCAUGCCG- -5'
7647 3' -56.1 NC_001973.1 + 152383 0.68 0.839311
Target:  5'- gACggCCGGCgCGgGCGGGcGCGggGCGGCg -3'
miRNA:   3'- -UGa-GGCUGgGCaUGUCC-UGCa-UGCCG- -5'
7647 3' -56.1 NC_001973.1 + 157880 0.67 0.883968
Target:  5'- cGCUgCGGCUCGUGucGGAgGUcGCGGCc -3'
miRNA:   3'- -UGAgGCUGGGCAUguCCUgCA-UGCCG- -5'
7647 3' -56.1 NC_001973.1 + 158037 0.67 0.897186
Target:  5'- cGCcgCCGcGCCCGUGCguAGcGACGacucgccgaggaUACGGCg -3'
miRNA:   3'- -UGa-GGC-UGGGCAUG--UC-CUGC------------AUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.