Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 84308 | 0.68 | 0.532613 |
Target: 5'- cGGCCGCGUccgccgcccaggacGUCag-CUaCGGCCGGCu -3' miRNA: 3'- cCCGGCGCG--------------CAGgaaGAgGUCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 81803 | 0.75 | 0.217976 |
Target: 5'- cGGCCGCgGUGUCCggCgCC-GCCGGCg -3' miRNA: 3'- cCCGGCG-CGCAGGaaGaGGuCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 81638 | 0.77 | 0.167903 |
Target: 5'- uGGUCGCGCGcgCCg-CUUCGGCCGGCc -3' miRNA: 3'- cCCGGCGCGCa-GGaaGAGGUCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 80459 | 0.69 | 0.50746 |
Target: 5'- uGGCgGCG-GUCCggCgCCAGCuCGGCc -3' miRNA: 3'- cCCGgCGCgCAGGaaGaGGUCG-GCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 77369 | 0.7 | 0.427747 |
Target: 5'- cGGCCGCGCGcCCgcgc---GCCGGCg -3' miRNA: 3'- cCCGGCGCGCaGGaagagguCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 71757 | 0.71 | 0.411052 |
Target: 5'- cGGCCGCGcCGggccccgccgCCgagCUCgaGGCCGGCg -3' miRNA: 3'- cCCGGCGC-GCa---------GGaa-GAGg-UCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 62938 | 0.67 | 0.602506 |
Target: 5'- cGGGCCG-GCGUCgucaguagaCUUgCgcgagCCcGCCGGCg -3' miRNA: 3'- -CCCGGCgCGCAG---------GAA-Ga----GGuCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 61327 | 0.68 | 0.587018 |
Target: 5'- -cGCCgGCGCGcagcUgCUUCUCCGccaccgcguagucguGCCGGCa -3' miRNA: 3'- ccCGG-CGCGC----AgGAAGAGGU---------------CGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 61124 | 0.66 | 0.670509 |
Target: 5'- cGGGgCGCgGCGUCgCUcCUCgAGCucguacCGGCg -3' miRNA: 3'- -CCCgGCG-CGCAG-GAaGAGgUCG------GCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 61095 | 0.67 | 0.631663 |
Target: 5'- aGGCCGCGCGgCCgaCggagCAGCggCGGCg -3' miRNA: 3'- cCCGGCGCGCaGGaaGag--GUCG--GCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 59893 | 0.68 | 0.592818 |
Target: 5'- cGGCgGCGCGgugucggCCaacgCgagCCAGCCGcGCg -3' miRNA: 3'- cCCGgCGCGCa------GGaa--Ga--GGUCGGC-CG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 59013 | 0.78 | 0.148741 |
Target: 5'- cGGcGCCGaCGUGUUCUUUUCCGGCgaCGGCa -3' miRNA: 3'- -CC-CGGC-GCGCAGGAAGAGGUCG--GCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 53628 | 0.66 | 0.689792 |
Target: 5'- cGGCgCGCGCGUgCgguaaUCCAGaUUGGCc -3' miRNA: 3'- cCCG-GCGCGCAgGaag--AGGUC-GGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 52851 | 0.82 | 0.086068 |
Target: 5'- cGGCCGCGCGcggCCggUCggUCCAGCUGGCg -3' miRNA: 3'- cCCGGCGCGCa--GGa-AG--AGGUCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 47749 | 0.66 | 0.680168 |
Target: 5'- cGGCCGCccgGCGgaaucacggccUCCUcggcgCUCCucagguccaGGCCGGCc -3' miRNA: 3'- cCCGGCG---CGC-----------AGGAa----GAGG---------UCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 45223 | 0.71 | 0.414358 |
Target: 5'- cGGGCCGCGUGcugccggcccgccaCCUggcucauguUCUgCgGGCCGGCa -3' miRNA: 3'- -CCCGGCGCGCa-------------GGA---------AGA-GgUCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 41400 | 0.69 | 0.489157 |
Target: 5'- aGGGCgucuauguCGCGCG-CCgcCUCCGcGUCGGCc -3' miRNA: 3'- -CCCG--------GCGCGCaGGaaGAGGU-CGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 35370 | 0.66 | 0.688831 |
Target: 5'- cGGGCUacuuuuuGCGCG-CCgcgCUCCAcggcuaccgcGCCGcGCg -3' miRNA: 3'- -CCCGG-------CGCGCaGGaa-GAGGU----------CGGC-CG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 31978 | 0.77 | 0.17617 |
Target: 5'- cGGGCUGCGCG-CCgaUCUCC-GCCGcGCu -3' miRNA: 3'- -CCCGGCGCGCaGGa-AGAGGuCGGC-CG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 30364 | 0.67 | 0.651113 |
Target: 5'- cGGGCCgccgGCGCGgcgaC-UCgggugCgGGCCGGCg -3' miRNA: 3'- -CCCGG----CGCGCag--GaAGa----GgUCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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