miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7647 5' -61.9 NC_001973.1 + 89618 0.66 0.699372
Target:  5'- cGGGCacgugcggcuuCGCGCGUUgguuUUUUUUCAGCguCGGCa -3'
miRNA:   3'- -CCCG-----------GCGCGCAG----GAAGAGGUCG--GCCG- -5'
7647 5' -61.9 NC_001973.1 + 23250 0.66 0.699372
Target:  5'- -cGCCGCGUGUCgCUgC-CCcGCCGcGCg -3'
miRNA:   3'- ccCGGCGCGCAG-GAaGaGGuCGGC-CG- -5'
7647 5' -61.9 NC_001973.1 + 94406 0.66 0.699372
Target:  5'- cGGCC-CGCGgcgCCgc--CCGGaCCGGCg -3'
miRNA:   3'- cCCGGcGCGCa--GGaagaGGUC-GGCCG- -5'
7647 5' -61.9 NC_001973.1 + 9632 0.66 0.708901
Target:  5'- -cGCCGCugGCGUUCggCUCgagggcgcgguaCAGCCGGUc -3'
miRNA:   3'- ccCGGCG--CGCAGGaaGAG------------GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 112908 0.66 0.708901
Target:  5'- --uCUGCGCGUCUcgCUCCAuauguucCCGGCg -3'
miRNA:   3'- cccGGCGCGCAGGaaGAGGUc------GGCCG- -5'
7647 5' -61.9 NC_001973.1 + 160072 0.66 0.684022
Target:  5'- aGGCUGCGC-UCCUcgaUCUCguGCUguuccaagugcuuuuGGCg -3'
miRNA:   3'- cCCGGCGCGcAGGA---AGAGguCGG---------------CCG- -5'
7647 5' -61.9 NC_001973.1 + 152361 0.66 0.680168
Target:  5'- -cGCCGCGCGaaugagcgagCCgga--CGGCCGGCg -3'
miRNA:   3'- ccCGGCGCGCa---------GGaagagGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 22580 0.67 0.640419
Target:  5'- gGGGUuuUGCGCGaUCCgcgagUCgaacgcgUCgGGCCGGCc -3'
miRNA:   3'- -CCCG--GCGCGC-AGGa----AG-------AGgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 109312 0.67 0.641391
Target:  5'- gGGGUCgaggaGCGCGUCgCgcgCgaaccggaaCAGCCGGCg -3'
miRNA:   3'- -CCCGG-----CGCGCAG-Gaa-Gag-------GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 133463 0.67 0.642364
Target:  5'- cGGGUCGCGCacggagcgCCAGCgGGCg -3'
miRNA:   3'- -CCCGGCGCGcaggaagaGGUCGgCCG- -5'
7647 5' -61.9 NC_001973.1 + 125436 0.67 0.650142
Target:  5'- cGGGCCGC-CGUCCacaaccgacugauUUCgaUCgAGCUGGa -3'
miRNA:   3'- -CCCGGCGcGCAGG-------------AAG--AGgUCGGCCg -5'
7647 5' -61.9 NC_001973.1 + 4130 0.67 0.651113
Target:  5'- cGGCCGCGUucGaCCa---CCAGUCGGCg -3'
miRNA:   3'- cCCGGCGCG--CaGGaagaGGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 30364 0.67 0.651113
Target:  5'- cGGGCCgccgGCGCGgcgaC-UCgggugCgGGCCGGCg -3'
miRNA:   3'- -CCCGG----CGCGCag--GaAGa----GgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 101437 0.67 0.651113
Target:  5'- -cGCCGuCGCaGUCCgugUUCgAGCCGGg -3'
miRNA:   3'- ccCGGC-GCG-CAGGaa-GAGgUCGGCCg -5'
7647 5' -61.9 NC_001973.1 + 139066 0.67 0.651113
Target:  5'- -uGCCguucgaGCGCGUCCcucUUCUCCugguggucGUCGGCg -3'
miRNA:   3'- ccCGG------CGCGCAGG---AAGAGGu-------CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 109197 0.66 0.660822
Target:  5'- -cGCCGCGCaG-CCggC-CCAGCuCGGCc -3'
miRNA:   3'- ccCGGCGCG-CaGGaaGaGGUCG-GCCG- -5'
7647 5' -61.9 NC_001973.1 + 61124 0.66 0.670509
Target:  5'- cGGGgCGCgGCGUCgCUcCUCgAGCucguacCGGCg -3'
miRNA:   3'- -CCCgGCG-CGCAG-GAaGAGgUCG------GCCG- -5'
7647 5' -61.9 NC_001973.1 + 132817 0.66 0.679204
Target:  5'- -uGUCGCGCGUCUcgC-CCauggacuggaaauAGCCGGCc -3'
miRNA:   3'- ccCGGCGCGCAGGaaGaGG-------------UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 4751 0.66 0.680168
Target:  5'- cGGCCGUcaccaGUUCUUUgUCC-GCCGGCg -3'
miRNA:   3'- cCCGGCGcg---CAGGAAG-AGGuCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 47749 0.66 0.680168
Target:  5'- cGGCCGCccgGCGgaaucacggccUCCUcggcgCUCCucagguccaGGCCGGCc -3'
miRNA:   3'- cCCGGCG---CGC-----------AGGAa----GAGG---------UCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.