miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7648 5' -52.6 NC_001973.1 + 31090 0.66 0.987132
Target:  5'- gCCAGcgagGGCgcguUGGugAUguuguggugcuucgcGGUCGUGCCg -3'
miRNA:   3'- gGGUU----UCGa---ACCugUA---------------CCAGCACGGg -5'
7648 5' -52.6 NC_001973.1 + 92804 0.66 0.984771
Target:  5'- gUCCAAGuucgguGCUgGGGCGUcGUCaUGCCCg -3'
miRNA:   3'- -GGGUUU------CGAaCCUGUAcCAGcACGGG- -5'
7648 5' -52.6 NC_001973.1 + 76461 0.66 0.982893
Target:  5'- gCCAAGGaCaUGGGCGgcucGG-CGgUGCCCg -3'
miRNA:   3'- gGGUUUC-GaACCUGUa---CCaGC-ACGGG- -5'
7648 5' -52.6 NC_001973.1 + 52621 0.66 0.982893
Target:  5'- gUCAAAGUcgGGACGccGGUCGacgagcacGCCCg -3'
miRNA:   3'- gGGUUUCGaaCCUGUa-CCAGCa-------CGGG- -5'
7648 5' -52.6 NC_001973.1 + 104275 0.66 0.978621
Target:  5'- gCCGccGCc-GGGC-UGGUCGUGUCUc -3'
miRNA:   3'- gGGUuuCGaaCCUGuACCAGCACGGG- -5'
7648 5' -52.6 NC_001973.1 + 85728 0.66 0.978621
Target:  5'- gCCgCAcGGCgUUGGAguUGGUCGccGCCg -3'
miRNA:   3'- -GG-GUuUCG-AACCUguACCAGCa-CGGg -5'
7648 5' -52.6 NC_001973.1 + 21348 0.66 0.977917
Target:  5'- gCCCGAGuugccgguggucuuGCUcaaUGGA--UGGUCGgugagGCCCa -3'
miRNA:   3'- -GGGUUU--------------CGA---ACCUguACCAGCa----CGGG- -5'
7648 5' -52.6 NC_001973.1 + 159565 0.67 0.9708
Target:  5'- cUCCucGGC--GGA---GGUCGUGCCCa -3'
miRNA:   3'- -GGGuuUCGaaCCUguaCCAGCACGGG- -5'
7648 5' -52.6 NC_001973.1 + 111230 0.67 0.9708
Target:  5'- gCCCGugcaGAGCUacacGGGCGagggGGUCGacgcggacgcgcUGCCCg -3'
miRNA:   3'- -GGGU----UUCGAa---CCUGUa---CCAGC------------ACGGG- -5'
7648 5' -52.6 NC_001973.1 + 86856 0.67 0.9708
Target:  5'- gCCCAGuGCUcgcgcUGcGGCAUGGUCGUcgugaaGCUg -3'
miRNA:   3'- -GGGUUuCGA-----AC-CUGUACCAGCA------CGGg -5'
7648 5' -52.6 NC_001973.1 + 34955 0.68 0.948547
Target:  5'- aCCGccGAGCUgaacgcgcucacGGACGaGGUgugCGUGCCCg -3'
miRNA:   3'- gGGU--UUCGAa-----------CCUGUaCCA---GCACGGG- -5'
7648 5' -52.6 NC_001973.1 + 125628 0.69 0.913674
Target:  5'- aCCGGAGaUUUGGGCGggccguucgGGUCGagGCCUg -3'
miRNA:   3'- gGGUUUC-GAACCUGUa--------CCAGCa-CGGG- -5'
7648 5' -52.6 NC_001973.1 + 139544 0.76 0.588576
Target:  5'- aCCUAguaAGGUUUGgGAUAUGcGUUGUGCCCg -3'
miRNA:   3'- -GGGU---UUCGAAC-CUGUAC-CAGCACGGG- -5'
7648 5' -52.6 NC_001973.1 + 151780 1.15 0.002825
Target:  5'- gCCCAAAGCUUGGACAUGGUCGUGCCCg -3'
miRNA:   3'- -GGGUUUCGAACCUGUACCAGCACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.