miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
765 3' -56 NC_000852.3 + 92122 0.66 0.974746
Target:  5'- gUAGACGCuugugcuuucccAACUCCAGAU-C-UCCCCGc -3'
miRNA:   3'- -GUCUGCG------------UUGGGGUCUAuGcAGGGGU- -5'
765 3' -56 NC_000852.3 + 298989 0.67 0.966557
Target:  5'- gAGuCGU--CCCCGGAuuaUACGUCCaCCAg -3'
miRNA:   3'- gUCuGCGuuGGGGUCU---AUGCAGG-GGU- -5'
765 3' -56 NC_000852.3 + 99758 0.67 0.963452
Target:  5'- cCAGGCGaucCCCCGGGUGaacCCCCGa -3'
miRNA:   3'- -GUCUGCguuGGGGUCUAUgcaGGGGU- -5'
765 3' -56 NC_000852.3 + 116199 0.67 0.963452
Target:  5'- aCAGACGCAuACUCCAGGUAgGUUgUg- -3'
miRNA:   3'- -GUCUGCGU-UGGGGUCUAUgCAGgGgu -5'
765 3' -56 NC_000852.3 + 116644 0.69 0.915678
Target:  5'- -cGGCGcCAACCCCGGGUGgGUUUCUc -3'
miRNA:   3'- guCUGC-GUUGGGGUCUAUgCAGGGGu -5'
765 3' -56 NC_000852.3 + 7602 0.7 0.891891
Target:  5'- -uGACGCGucaAUUCCAGggAUGUCCCCc -3'
miRNA:   3'- guCUGCGU---UGGGGUCuaUGCAGGGGu -5'
765 3' -56 NC_000852.3 + 264709 0.73 0.756992
Target:  5'- aCAGAuCGUuACCCCAGAUGucgcgguCGUCCUCGa -3'
miRNA:   3'- -GUCU-GCGuUGGGGUCUAU-------GCAGGGGU- -5'
765 3' -56 NC_000852.3 + 138114 0.75 0.61463
Target:  5'- uUAGACGCcacGGCCCCacccAGAgACGUCCCCc -3'
miRNA:   3'- -GUCUGCG---UUGGGG----UCUaUGCAGGGGu -5'
765 3' -56 NC_000852.3 + 293972 0.89 0.122725
Target:  5'- cCAGuCGCAAUCCCAGAcACGUCCCCAg -3'
miRNA:   3'- -GUCuGCGUUGGGGUCUaUGCAGGGGU- -5'
765 3' -56 NC_000852.3 + 293924 0.93 0.065319
Target:  5'- cCAGACGCAACCCCAGAcACGcCCCCAu -3'
miRNA:   3'- -GUCUGCGUUGGGGUCUaUGCaGGGGU- -5'
765 3' -56 NC_000852.3 + 294020 1.08 0.007093
Target:  5'- cCAGACGCAACCCCAGAUACGUCCCCAg -3'
miRNA:   3'- -GUCUGCGUUGGGGUCUAUGCAGGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.