miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
765 5' -54.7 NC_000852.3 + 142564 0.66 0.99322
Target:  5'- cCCCAGuguCGCGUagauccccgaCCCCAGUgucgCGCAAagaaCCu -3'
miRNA:   3'- -GGGUCu--GUGCA----------GGGGUCA----GCGUUa---GG- -5'
765 5' -54.7 NC_000852.3 + 271903 0.66 0.992282
Target:  5'- cUCCu--CGCGUUCCCGGagcaucacaUCGCAuggGUCCg -3'
miRNA:   3'- -GGGucuGUGCAGGGGUC---------AGCGU---UAGG- -5'
765 5' -54.7 NC_000852.3 + 321963 0.66 0.991981
Target:  5'- aCCGcGAgACGUCUUCAGUucaagagucaugaaCGCAGUCUc -3'
miRNA:   3'- gGGU-CUgUGCAGGGGUCA--------------GCGUUAGG- -5'
765 5' -54.7 NC_000852.3 + 293925 0.66 0.991244
Target:  5'- nCCAGACGCaaCCCCAGacaCGCcc-CCa -3'
miRNA:   3'- gGGUCUGUGcaGGGGUCa--GCGuuaGG- -5'
765 5' -54.7 NC_000852.3 + 144430 0.67 0.990099
Target:  5'- cCCCAGuguCGCGuaaaUCCCCAaccucaguGUUGCGuagAUCCc -3'
miRNA:   3'- -GGGUCu--GUGC----AGGGGU--------CAGCGU---UAGG- -5'
765 5' -54.7 NC_000852.3 + 238157 0.67 0.990099
Target:  5'- --aAGAUAUGUUCCCGGUUGaCAA-CCa -3'
miRNA:   3'- gggUCUGUGCAGGGGUCAGC-GUUaGG- -5'
765 5' -54.7 NC_000852.3 + 194890 0.67 0.989978
Target:  5'- aCCCAGACACGaaacgauUCCUCAG-CGagGAUUa -3'
miRNA:   3'- -GGGUCUGUGC-------AGGGGUCaGCg-UUAGg -5'
765 5' -54.7 NC_000852.3 + 87607 0.67 0.987458
Target:  5'- aCCGGcAC-CGUCCCCAG-CGuUGAUCa -3'
miRNA:   3'- gGGUC-UGuGCAGGGGUCaGC-GUUAGg -5'
765 5' -54.7 NC_000852.3 + 177808 0.68 0.980584
Target:  5'- aUCCAGGCuuCGUCUUCGcaagcgaccGUCGCGuUCCa -3'
miRNA:   3'- -GGGUCUGu-GCAGGGGU---------CAGCGUuAGG- -5'
765 5' -54.7 NC_000852.3 + 61765 0.68 0.978494
Target:  5'- -aCGGACAcucguCGUCUguCCAGUCGCAAUa- -3'
miRNA:   3'- ggGUCUGU-----GCAGG--GGUCAGCGUUAgg -5'
765 5' -54.7 NC_000852.3 + 50145 0.68 0.978494
Target:  5'- cCCCGGAUACcaauGUCCuCCAGUUGUuuUUg -3'
miRNA:   3'- -GGGUCUGUG----CAGG-GGUCAGCGuuAGg -5'
765 5' -54.7 NC_000852.3 + 68040 0.68 0.973821
Target:  5'- uCCCAGAgGCGUCUaaaaCAGUCaacucaGCAAagCCu -3'
miRNA:   3'- -GGGUCUgUGCAGGg---GUCAG------CGUUa-GG- -5'
765 5' -54.7 NC_000852.3 + 299184 0.68 0.971226
Target:  5'- aCCgGGAcCAgGUCaaCGGUCGCAAUUCc -3'
miRNA:   3'- -GGgUCU-GUgCAGggGUCAGCGUUAGG- -5'
765 5' -54.7 NC_000852.3 + 301312 0.69 0.958997
Target:  5'- aCCgAGGCAgGUgCCCgGGUCGUAGagaccuUCCu -3'
miRNA:   3'- -GGgUCUGUgCA-GGGgUCAGCGUU------AGG- -5'
765 5' -54.7 NC_000852.3 + 223412 0.7 0.943602
Target:  5'- uUCCAGAUACGaaCUUGGUaCGCAGUCUa -3'
miRNA:   3'- -GGGUCUGUGCagGGGUCA-GCGUUAGG- -5'
765 5' -54.7 NC_000852.3 + 35403 0.71 0.924855
Target:  5'- cCCUAGAa---UCCCCGGUCGUuauauAGUCCa -3'
miRNA:   3'- -GGGUCUgugcAGGGGUCAGCG-----UUAGG- -5'
765 5' -54.7 NC_000852.3 + 294009 0.72 0.877231
Target:  5'- nCCAGAUACGUCCCCAGacaCGUn---- -3'
miRNA:   3'- gGGUCUGUGCAGGGGUCa--GCGuuagg -5'
765 5' -54.7 NC_000852.3 + 138131 0.74 0.809015
Target:  5'- aCCCAGAgACGUCCCCccgauaaaaauaGGUaCGUu-UCCg -3'
miRNA:   3'- -GGGUCUgUGCAGGGG------------UCA-GCGuuAGG- -5'
765 5' -54.7 NC_000852.3 + 293950 0.95 0.069946
Target:  5'- cCCCAGACACGUCCCCAGaCGCAAcCCc -3'
miRNA:   3'- -GGGUCUGUGCAGGGGUCaGCGUUaGG- -5'
765 5' -54.7 NC_000852.3 + 294034 0.95 0.069946
Target:  5'- cCCCAGACACGUCCCCAGaCGCAAcCCc -3'
miRNA:   3'- -GGGUCUGUGCAGGGGUCaGCGUUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.