miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7651 5' -59.6 NC_001973.1 + 62570 0.66 0.786133
Target:  5'- uGUgcGAGGGCUcgaGCGGGcGCagcgacgcGUCGCUCg -3'
miRNA:   3'- gCA--UUUCCGG---CGCCC-CGga------CAGCGAG- -5'
7651 5' -59.6 NC_001973.1 + 135667 0.66 0.77712
Target:  5'- gGUGuuGGCCGUGGcgcuGGCCUG-CGgUUu -3'
miRNA:   3'- gCAUuuCCGGCGCC----CCGGACaGCgAG- -5'
7651 5' -59.6 NC_001973.1 + 78623 0.66 0.767984
Target:  5'- aCGacGAGGCCGCGGGcGCUcGagGCg- -3'
miRNA:   3'- -GCauUUCCGGCGCCC-CGGaCagCGag -5'
7651 5' -59.6 NC_001973.1 + 21272 0.66 0.767984
Target:  5'- -----cGaGCCGCGgcguccgccGGGCC-GUCGCUCa -3'
miRNA:   3'- gcauuuC-CGGCGC---------CCCGGaCAGCGAG- -5'
7651 5' -59.6 NC_001973.1 + 83653 0.67 0.72075
Target:  5'- --cGAAGcGCUGCGGcGGCCcGcUCGCUUc -3'
miRNA:   3'- gcaUUUC-CGGCGCC-CCGGaC-AGCGAG- -5'
7651 5' -59.6 NC_001973.1 + 27872 0.67 0.72075
Target:  5'- -----cGGCCGCGGGcGCggGcgCGCUCu -3'
miRNA:   3'- gcauuuCCGGCGCCC-CGgaCa-GCGAG- -5'
7651 5' -59.6 NC_001973.1 + 50345 0.67 0.72075
Target:  5'- uGUGAGGGCgaucgcucaaUGCGGGcaCCacgcgGUCGCUCa -3'
miRNA:   3'- gCAUUUCCG----------GCGCCCc-GGa----CAGCGAG- -5'
7651 5' -59.6 NC_001973.1 + 132444 0.67 0.711052
Target:  5'- gGUGGAGGCgccgGCGGGGCgCggccucGUCggGCUCg -3'
miRNA:   3'- gCAUUUCCGg---CGCCCCG-Ga-----CAG--CGAG- -5'
7651 5' -59.6 NC_001973.1 + 21559 0.67 0.701291
Target:  5'- cCGUGGucccGGCgCGCGGGGUUgaagUGCUCg -3'
miRNA:   3'- -GCAUUu---CCG-GCGCCCCGGaca-GCGAG- -5'
7651 5' -59.6 NC_001973.1 + 76052 0.67 0.691474
Target:  5'- ----cAGaCCGUcuucGuGGGCCUGUCGCUCg -3'
miRNA:   3'- gcauuUCcGGCG----C-CCCGGACAGCGAG- -5'
7651 5' -59.6 NC_001973.1 + 81040 0.67 0.68161
Target:  5'- gGUAugcGGGCCGCGucgacGGGCgUG-CGCUUc -3'
miRNA:   3'- gCAUu--UCCGGCGC-----CCCGgACaGCGAG- -5'
7651 5' -59.6 NC_001973.1 + 17255 0.68 0.631869
Target:  5'- uGUAcucGGCCGCGGcGGCCg--CGCa- -3'
miRNA:   3'- gCAUuu-CCGGCGCC-CCGGacaGCGag -5'
7651 5' -59.6 NC_001973.1 + 92015 0.68 0.621891
Target:  5'- -----uGGCCGCaaucGCCUGUCGCUCc -3'
miRNA:   3'- gcauuuCCGGCGccc-CGGACAGCGAG- -5'
7651 5' -59.6 NC_001973.1 + 61118 0.72 0.440594
Target:  5'- -----cGGCgGCGGGGCgCggcGUCGCUCc -3'
miRNA:   3'- gcauuuCCGgCGCCCCG-Ga--CAGCGAG- -5'
7651 5' -59.6 NC_001973.1 + 52845 0.73 0.365583
Target:  5'- uGUAGAcGGCCGCGcGcGGCCgGUCGgUCc -3'
miRNA:   3'- gCAUUU-CCGGCGC-C-CCGGaCAGCgAG- -5'
7651 5' -59.6 NC_001973.1 + 100091 0.73 0.35781
Target:  5'- aGUuucuGGUgGCGGGGUC-GUCGCUCg -3'
miRNA:   3'- gCAuuu-CCGgCGCCCCGGaCAGCGAG- -5'
7651 5' -59.6 NC_001973.1 + 149307 1.09 0.001407
Target:  5'- cCGUAAAGGCCGCGGGGCCUGUCGCUCu -3'
miRNA:   3'- -GCAUUUCCGGCGCCCCGGACAGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.