miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7652 3' -53.2 NC_001973.1 + 59114 0.66 0.972499
Target:  5'- aGCUgAGcgcGUUCGUGgCCAaGUUGGCg -3'
miRNA:   3'- -CGAgUCuaaCGAGCACaGGU-CGACCG- -5'
7652 3' -53.2 NC_001973.1 + 100775 0.66 0.963131
Target:  5'- aCUCGGAggGCagcgcgcacaCGUGgCCAGCgGGCg -3'
miRNA:   3'- cGAGUCUaaCGa---------GCACaGGUCGaCCG- -5'
7652 3' -53.2 NC_001973.1 + 10486 0.66 0.962085
Target:  5'- uGCUgGGGUUgcacgagcgggcgcGCUCGcgGUUCAGCgccaGGCa -3'
miRNA:   3'- -CGAgUCUAA--------------CGAGCa-CAGGUCGa---CCG- -5'
7652 3' -53.2 NC_001973.1 + 51932 0.67 0.959566
Target:  5'- aGCcgCGGAggaCUCG-GUCUAGCUGGa -3'
miRNA:   3'- -CGa-GUCUaacGAGCaCAGGUCGACCg -5'
7652 3' -53.2 NC_001973.1 + 50524 0.68 0.933197
Target:  5'- cGCUCcuuGAa--CUCGg--CCAGCUGGCg -3'
miRNA:   3'- -CGAGu--CUaacGAGCacaGGUCGACCG- -5'
7652 3' -53.2 NC_001973.1 + 91933 0.68 0.922444
Target:  5'- aGCa-AGAgUUGUUCGUGUugcgCCAGCUuGGCg -3'
miRNA:   3'- -CGagUCU-AACGAGCACA----GGUCGA-CCG- -5'
7652 3' -53.2 NC_001973.1 + 120066 0.68 0.910699
Target:  5'- cGUUgAGGgugcGCUCGUcGUCCAGCUGuuuGCc -3'
miRNA:   3'- -CGAgUCUaa--CGAGCA-CAGGUCGAC---CG- -5'
7652 3' -53.2 NC_001973.1 + 10332 0.69 0.904456
Target:  5'- cGCUCguugAGGUcgGCgaugCGgccGUUCGGCUGGCa -3'
miRNA:   3'- -CGAG----UCUAa-CGa---GCa--CAGGUCGACCG- -5'
7652 3' -53.2 NC_001973.1 + 101134 0.69 0.897971
Target:  5'- --gCAGAUaGCUCGUGUUgGaGCUGaGCa -3'
miRNA:   3'- cgaGUCUAaCGAGCACAGgU-CGAC-CG- -5'
7652 3' -53.2 NC_001973.1 + 32002 0.69 0.884283
Target:  5'- cGCUCAG---GC-CGUGcaaCAGCUGGCc -3'
miRNA:   3'- -CGAGUCuaaCGaGCACag-GUCGACCG- -5'
7652 3' -53.2 NC_001973.1 + 52855 0.72 0.774961
Target:  5'- cGCgcgCGGcc-GgUCG-GUCCAGCUGGCg -3'
miRNA:   3'- -CGa--GUCuaaCgAGCaCAGGUCGACCG- -5'
7652 3' -53.2 NC_001973.1 + 146559 1.15 0.002066
Target:  5'- cGCUCAGAUUGCUCGUGUCCAGCUGGCa -3'
miRNA:   3'- -CGAGUCUAACGAGCACAGGUCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.