miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7653 3' -53.5 NC_001973.1 + 69973 0.66 0.958907
Target:  5'- uGAUGGcCCAcuugagaacGUCCGAGUCGUCgAUCg -3'
miRNA:   3'- -UUACCaGGUu--------CGGGUUCAGCGGaUAG- -5'
7653 3' -53.5 NC_001973.1 + 101564 0.66 0.955011
Target:  5'- cGUGGUCCAGGCgCgCAcGUUGCUcacGUCg -3'
miRNA:   3'- uUACCAGGUUCG-G-GUuCAGCGGa--UAG- -5'
7653 3' -53.5 NC_001973.1 + 21343 0.66 0.950873
Target:  5'- --cGG-CC--GCCCGAGUUGCCggugGUCu -3'
miRNA:   3'- uuaCCaGGuuCGGGUUCAGCGGa---UAG- -5'
7653 3' -53.5 NC_001973.1 + 21514 0.67 0.936964
Target:  5'- --aGGUU---GCCCAGGUCGCCg--- -3'
miRNA:   3'- uuaCCAGguuCGGGUUCAGCGGauag -5'
7653 3' -53.5 NC_001973.1 + 146015 0.67 0.931821
Target:  5'- --gGGUCCGccGGCUCGAG-CGCggGUCg -3'
miRNA:   3'- uuaCCAGGU--UCGGGUUCaGCGgaUAG- -5'
7653 3' -53.5 NC_001973.1 + 143608 0.67 0.926423
Target:  5'- --cGG-CCAGGCCCAGGcUCGCg---- -3'
miRNA:   3'- uuaCCaGGUUCGGGUUC-AGCGgauag -5'
7653 3' -53.5 NC_001973.1 + 100586 0.67 0.914858
Target:  5'- uGUGGUgCAGGCCCAGcgagguGUCGCUc--- -3'
miRNA:   3'- uUACCAgGUUCGGGUU------CAGCGGauag -5'
7653 3' -53.5 NC_001973.1 + 112786 0.68 0.908694
Target:  5'- ----cUCCAccguGCCCAAGUCGCCg--- -3'
miRNA:   3'- uuaccAGGUu---CGGGUUCAGCGGauag -5'
7653 3' -53.5 NC_001973.1 + 28909 0.68 0.895612
Target:  5'- --cGGUCCAgcAGCuCCGAGUCGUUg--- -3'
miRNA:   3'- uuaCCAGGU--UCG-GGUUCAGCGGauag -5'
7653 3' -53.5 NC_001973.1 + 70213 0.69 0.850614
Target:  5'- ---cGUCCGAGCCCAGGaaCGaCUGUCg -3'
miRNA:   3'- uuacCAGGUUCGGGUUCa-GCgGAUAG- -5'
7653 3' -53.5 NC_001973.1 + 21376 0.69 0.842334
Target:  5'- gGAUGGUCgGugaGGCCCAGaucGUC-CCUGUCc -3'
miRNA:   3'- -UUACCAGgU---UCGGGUU---CAGcGGAUAG- -5'
7653 3' -53.5 NC_001973.1 + 146321 1.08 0.004627
Target:  5'- aAAUGGUCCAAGCCCAAGUCGCCUAUCa -3'
miRNA:   3'- -UUACCAGGUUCGGGUUCAGCGGAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.