miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 62587 0.7 0.838947
Target:  5'- ----gGGCGCAGCGacGCgUcGCUCGAGCg -3'
miRNA:   3'- guuagCCGUGUUGC--CGgA-CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 45366 0.7 0.830477
Target:  5'- -cGUCGuGCAgUAGCcGCCuUGCUCGAGCa -3'
miRNA:   3'- guUAGC-CGU-GUUGcCGG-ACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 124299 0.7 0.830477
Target:  5'- gCAAU-GGUACGucgGCGGCacgcGCUCGAGCg -3'
miRNA:   3'- -GUUAgCCGUGU---UGCCGga--CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 59728 0.7 0.84722
Target:  5'- --uUCGGCugcugugcgACAACGGCCaccggGC-CGAGCu -3'
miRNA:   3'- guuAGCCG---------UGUUGCCGGa----CGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 87826 0.7 0.84722
Target:  5'- cCAGUCGaaGUGCAGCGGCCccuUG-UCGGGCg -3'
miRNA:   3'- -GUUAGC--CGUGUUGCCGG---ACgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 96043 0.7 0.855288
Target:  5'- --cUCgGGCugGGCGGUCUGUUCGcGUg -3'
miRNA:   3'- guuAG-CCGugUUGCCGGACGAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 69550 0.7 0.855288
Target:  5'- gAGUCGaGCGCGACGuaGCCgucGCUC-GGCa -3'
miRNA:   3'- gUUAGC-CGUGUUGC--CGGa--CGAGuUCG- -5'
7654 3' -53.1 NC_001973.1 + 16186 0.7 0.863145
Target:  5'- -uGUCGGCGCA--GGCC-GCUaGAGCg -3'
miRNA:   3'- guUAGCCGUGUugCCGGaCGAgUUCG- -5'
7654 3' -53.1 NC_001973.1 + 8100 0.7 0.870784
Target:  5'- ---aCGGCgaGCAcCGGCCgGCUCGuGCa -3'
miRNA:   3'- guuaGCCG--UGUuGCCGGaCGAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 60378 0.7 0.870784
Target:  5'- uCAcgCGGCACAAUaGCUgcacGCUCGAGg -3'
miRNA:   3'- -GUuaGCCGUGUUGcCGGa---CGAGUUCg -5'
7654 3' -53.1 NC_001973.1 + 146069 0.7 0.870784
Target:  5'- ---gCGGCGC--CGaGCCgGCUCGGGCg -3'
miRNA:   3'- guuaGCCGUGuuGC-CGGaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 10341 0.71 0.785466
Target:  5'- aGGUCGGCGauGCGGCC-GUUCGgcuGGCa -3'
miRNA:   3'- gUUAGCCGUguUGCCGGaCGAGU---UCG- -5'
7654 3' -53.1 NC_001973.1 + 131769 0.71 0.820943
Target:  5'- aCAcgCGGUugacgACGGCGGCCgGCUCGgugaaggGGCc -3'
miRNA:   3'- -GUuaGCCG-----UGUUGCCGGaCGAGU-------UCG- -5'
7654 3' -53.1 NC_001973.1 + 17578 0.71 0.821819
Target:  5'- gAAUCGGCGCccgaguCGGCgUGCU--GGCa -3'
miRNA:   3'- gUUAGCCGUGuu----GCCGgACGAguUCG- -5'
7654 3' -53.1 NC_001973.1 + 16907 0.72 0.766387
Target:  5'- ---cCGGCgGCGGCGGCCU-CUCGgcGGCg -3'
miRNA:   3'- guuaGCCG-UGUUGCCGGAcGAGU--UCG- -5'
7654 3' -53.1 NC_001973.1 + 46214 0.73 0.726808
Target:  5'- --uUCGcGCGCGACGGCCgGgUCAuguGCg -3'
miRNA:   3'- guuAGC-CGUGUUGCCGGaCgAGUu--CG- -5'
7654 3' -53.1 NC_001973.1 + 75230 0.73 0.716674
Target:  5'- aCGGUCGGCGCGuacaacaucaACGuucucgacacccGCCUGCUCGacgGGCu -3'
miRNA:   3'- -GUUAGCCGUGU----------UGC------------CGGACGAGU---UCG- -5'
7654 3' -53.1 NC_001973.1 + 120948 0.73 0.716674
Target:  5'- gCGGUCuGCACGGCGGCCaGCgc-GGCg -3'
miRNA:   3'- -GUUAGcCGUGUUGCCGGaCGaguUCG- -5'
7654 3' -53.1 NC_001973.1 + 27856 0.73 0.685859
Target:  5'- ---cCGGCGCuGGCGGCCgcgGCcgCGGGCg -3'
miRNA:   3'- guuaGCCGUG-UUGCCGGa--CGa-GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 44774 0.73 0.685859
Target:  5'- ----gGGCACAGCGGUUUGCU--GGCg -3'
miRNA:   3'- guuagCCGUGUUGCCGGACGAguUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.