Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 17578 | 0.71 | 0.821819 |
Target: 5'- gAAUCGGCGCccgaguCGGCgUGCU--GGCa -3' miRNA: 3'- gUUAGCCGUGuu----GCCGgACGAguUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 131769 | 0.71 | 0.820943 |
Target: 5'- aCAcgCGGUugacgACGGCGGCCgGCUCGgugaaggGGCc -3' miRNA: 3'- -GUuaGCCG-----UGUUGCCGGaCGAGU-------UCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 8100 | 0.7 | 0.870784 |
Target: 5'- ---aCGGCgaGCAcCGGCCgGCUCGuGCa -3' miRNA: 3'- guuaGCCG--UGUuGCCGGaCGAGUuCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 146069 | 0.7 | 0.870784 |
Target: 5'- ---gCGGCGC--CGaGCCgGCUCGGGCg -3' miRNA: 3'- guuaGCCGUGuuGC-CGGaCGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 16186 | 0.7 | 0.863145 |
Target: 5'- -uGUCGGCGCA--GGCC-GCUaGAGCg -3' miRNA: 3'- guUAGCCGUGUugCCGGaCGAgUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 59728 | 0.7 | 0.84722 |
Target: 5'- --uUCGGCugcugugcgACAACGGCCaccggGC-CGAGCu -3' miRNA: 3'- guuAGCCG---------UGUUGCCGGa----CGaGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 60378 | 0.7 | 0.870784 |
Target: 5'- uCAcgCGGCACAAUaGCUgcacGCUCGAGg -3' miRNA: 3'- -GUuaGCCGUGUUGcCGGa---CGAGUUCg -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 96043 | 0.7 | 0.855288 |
Target: 5'- --cUCgGGCugGGCGGUCUGUUCGcGUg -3' miRNA: 3'- guuAG-CCGugUUGCCGGACGAGUuCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 112851 | 0.7 | 0.838947 |
Target: 5'- ---cCGcGCACAGC-GCCaGCUCGGGCu -3' miRNA: 3'- guuaGC-CGUGUUGcCGGaCGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 87826 | 0.7 | 0.84722 |
Target: 5'- cCAGUCGaaGUGCAGCGGCCccuUG-UCGGGCg -3' miRNA: 3'- -GUUAGC--CGUGUUGCCGG---ACgAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 69550 | 0.7 | 0.855288 |
Target: 5'- gAGUCGaGCGCGACGuaGCCgucGCUC-GGCa -3' miRNA: 3'- gUUAGC-CGUGUUGC--CGGa--CGAGuUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 123993 | 0.7 | 0.838947 |
Target: 5'- ---aCGGCgACGucGCGGCCUGaccagUCGGGCg -3' miRNA: 3'- guuaGCCG-UGU--UGCCGGACg----AGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 45366 | 0.7 | 0.830477 |
Target: 5'- -cGUCGuGCAgUAGCcGCCuUGCUCGAGCa -3' miRNA: 3'- guUAGC-CGU-GUUGcCGG-ACGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 124299 | 0.7 | 0.830477 |
Target: 5'- gCAAU-GGUACGucgGCGGCacgcGCUCGAGCg -3' miRNA: 3'- -GUUAgCCGUGU---UGCCGga--CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 62587 | 0.7 | 0.838947 |
Target: 5'- ----gGGCGCAGCGacGCgUcGCUCGAGCg -3' miRNA: 3'- guuagCCGUGUUGC--CGgA-CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 55816 | 0.69 | 0.902956 |
Target: 5'- uCGAaCGGCgACAGaGGCCUGCggaccggcgagggCGAGCg -3' miRNA: 3'- -GUUaGCCG-UGUUgCCGGACGa------------GUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 55888 | 0.69 | 0.885384 |
Target: 5'- ---cCGGCgGCGGCaGGCUcggGCUCGGGCu -3' miRNA: 3'- guuaGCCG-UGUUG-CCGGa--CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 30491 | 0.69 | 0.878199 |
Target: 5'- gCAGUCgGGCACGACGGU--GCgcaGGGCg -3' miRNA: 3'- -GUUAG-CCGUGUUGCCGgaCGag-UUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 139871 | 0.69 | 0.892334 |
Target: 5'- ---cUGGCACcacuugauCGGCaaGCUCGAGCg -3' miRNA: 3'- guuaGCCGUGuu------GCCGgaCGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 30395 | 0.69 | 0.878199 |
Target: 5'- ---cCGGCGCGGCGGCggcgGCggAGGCg -3' miRNA: 3'- guuaGCCGUGUUGCCGga--CGagUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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