miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 45878 0.67 0.947888
Target:  5'- --cUCGGC-C-GCGGCgCUGCUCGucgacuucgagacGGCa -3'
miRNA:   3'- guuAGCCGuGuUGCCG-GACGAGU-------------UCG- -5'
7654 3' -53.1 NC_001973.1 + 50535 0.67 0.948325
Target:  5'- --cUCGGC-CAGCuGGCgCucgUGCUCGAGUu -3'
miRNA:   3'- guuAGCCGuGUUG-CCG-G---ACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 8855 0.67 0.948325
Target:  5'- gGcgCGGCGacACGGgCUGUUCGAGa -3'
miRNA:   3'- gUuaGCCGUguUGCCgGACGAGUUCg -5'
7654 3' -53.1 NC_001973.1 + 22534 0.67 0.948325
Target:  5'- aCAAUUGcGCGCGACaggugacggcgGGCgaGUUCGAGUg -3'
miRNA:   3'- -GUUAGC-CGUGUUG-----------CCGgaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 4960 0.67 0.948325
Target:  5'- aCGAaCGGCACGGCGaGCC-GgUCGuGCg -3'
miRNA:   3'- -GUUaGCCGUGUUGC-CGGaCgAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 4852 0.67 0.948325
Target:  5'- aAGUCGGCgggcGCGACGuuuccGCCgUGCUCGuacaagGGCa -3'
miRNA:   3'- gUUAGCCG----UGUUGC-----CGG-ACGAGU------UCG- -5'
7654 3' -53.1 NC_001973.1 + 111012 0.67 0.948325
Target:  5'- gAcgUGaGCAUcGCGuGCCUGCUCAcGCc -3'
miRNA:   3'- gUuaGC-CGUGuUGC-CGGACGAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 70118 0.67 0.948325
Target:  5'- --cUCGGCGCccGCGGCgaUG-UCGAGCa -3'
miRNA:   3'- guuAGCCGUGu-UGCCGg-ACgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 23814 0.67 0.948325
Target:  5'- --uUCGGCGacGCGGCCcucgccgaGUUCAAGUa -3'
miRNA:   3'- guuAGCCGUguUGCCGGa-------CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 118107 0.66 0.973115
Target:  5'- aCGGUgGGC---GCGGC--GCUCAAGCa -3'
miRNA:   3'- -GUUAgCCGuguUGCCGgaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 45951 0.66 0.973115
Target:  5'- ---aCGGCGCGcucuugacgGCGGCCggcgcGCUCGcccuGCu -3'
miRNA:   3'- guuaGCCGUGU---------UGCCGGa----CGAGUu---CG- -5'
7654 3' -53.1 NC_001973.1 + 109344 0.66 0.972837
Target:  5'- aCAGcCGGCGCAGCuccgcucGGCCguaGCggucgaCGAGCg -3'
miRNA:   3'- -GUUaGCCGUGUUG-------CCGGa--CGa-----GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 139906 0.66 0.971417
Target:  5'- -uGUCGGUGCuGCGcGCCaUGCgcgccaugucucgcuUCGAGCa -3'
miRNA:   3'- guUAGCCGUGuUGC-CGG-ACG---------------AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 101010 0.66 0.970243
Target:  5'- aAAUCGGCGCugcccuUGGCgCcGCUCucgauGAGCg -3'
miRNA:   3'- gUUAGCCGUGuu----GCCG-GaCGAG-----UUCG- -5'
7654 3' -53.1 NC_001973.1 + 45641 0.66 0.970243
Target:  5'- -cGUCGaGCGCGgcgucguacGCGGCCUGCgcgucucggauUCGcGCg -3'
miRNA:   3'- guUAGC-CGUGU---------UGCCGGACG-----------AGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 136908 0.66 0.967158
Target:  5'- --cUUGGCGCAgcACGGCUUGCauaUCAGu- -3'
miRNA:   3'- guuAGCCGUGU--UGCCGGACG---AGUUcg -5'
7654 3' -53.1 NC_001973.1 + 133452 0.66 0.967158
Target:  5'- aAGUCGGCGCGcgggucgcgcACGgagcGCCaGCgggCGAGCa -3'
miRNA:   3'- gUUAGCCGUGU----------UGC----CGGaCGa--GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 101110 0.66 0.967158
Target:  5'- uCAGUCGGCACAGCucCUUGUaCA-GCa -3'
miRNA:   3'- -GUUAGCCGUGUUGccGGACGaGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 132454 0.66 0.963853
Target:  5'- ---cCGGCGgGgcGCGGCCUcgUCGGGCu -3'
miRNA:   3'- guuaGCCGUgU--UGCCGGAcgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 112751 0.66 0.970243
Target:  5'- gCGAaCGGCGaccguGCGGCCgGCUCGucgacGCu -3'
miRNA:   3'- -GUUaGCCGUgu---UGCCGGaCGAGUu----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.