miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 55816 0.69 0.902956
Target:  5'- uCGAaCGGCgACAGaGGCCUGCggaccggcgagggCGAGCg -3'
miRNA:   3'- -GUUaGCCG-UGUUgCCGGACGa------------GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 18617 0.69 0.905515
Target:  5'- -cGUCGGCA--ACGaGCCgccGUUCGAGCc -3'
miRNA:   3'- guUAGCCGUguUGC-CGGa--CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 28630 0.69 0.905515
Target:  5'- aGGUCGuuGCGCAGCGaGuCCUGCagcugcgCGAGCg -3'
miRNA:   3'- gUUAGC--CGUGUUGC-C-GGACGa------GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 119265 0.68 0.911738
Target:  5'- -----aGCGCAGCGGCCUGUacgaCGAGUu -3'
miRNA:   3'- guuagcCGUGUUGCCGGACGa---GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 109728 0.68 0.911738
Target:  5'- -uGUCGuuGC-ACGGCUUGCgCGAGCg -3'
miRNA:   3'- guUAGCcgUGuUGCCGGACGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 106041 0.68 0.911738
Target:  5'- ---aCGGC-CGGCGGUCguaGUUCAGGUa -3'
miRNA:   3'- guuaGCCGuGUUGCCGGa--CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 1824 0.68 0.917714
Target:  5'- cCGAgCGcGCAC-ACGGCCagGCUguGGCa -3'
miRNA:   3'- -GUUaGC-CGUGuUGCCGGa-CGAguUCG- -5'
7654 3' -53.1 NC_001973.1 + 29744 0.68 0.917714
Target:  5'- ---cCGGCcuucuuCGACGGCCUGUgCGAGa -3'
miRNA:   3'- guuaGCCGu-----GUUGCCGGACGaGUUCg -5'
7654 3' -53.1 NC_001973.1 + 128122 0.68 0.917714
Target:  5'- cCGAgCGaGCAC-ACGGCCagGCUguGGCa -3'
miRNA:   3'- -GUUaGC-CGUGuUGCCGGa-CGAguUCG- -5'
7654 3' -53.1 NC_001973.1 + 20084 0.68 0.917714
Target:  5'- cCGAgCGaGCAC-ACGGCCagGCUguGGCa -3'
miRNA:   3'- -GUUaGC-CGUGuUGCCGGa-CGAguUCG- -5'
7654 3' -53.1 NC_001973.1 + 124718 0.68 0.928916
Target:  5'- ---aCGGCAgGuucuACGGCCUGgaccgCGAGCg -3'
miRNA:   3'- guuaGCCGUgU----UGCCGGACga---GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 9769 0.68 0.93363
Target:  5'- gCGAUCGuuuUAUAGCGGCCcaucaauUGCUCcGGCg -3'
miRNA:   3'- -GUUAGCc--GUGUUGCCGG-------ACGAGuUCG- -5'
7654 3' -53.1 NC_001973.1 + 83935 0.68 0.934141
Target:  5'- ---gCGGaCACGGCGcGCC-GCUCGgaGGCg -3'
miRNA:   3'- guuaGCC-GUGUUGC-CGGaCGAGU--UCG- -5'
7654 3' -53.1 NC_001973.1 + 44410 0.68 0.934141
Target:  5'- --cUCGcGCAgCAGCGGCUccGCUCGGGg -3'
miRNA:   3'- guuAGC-CGU-GUUGCCGGa-CGAGUUCg -5'
7654 3' -53.1 NC_001973.1 + 105360 0.67 0.939117
Target:  5'- aCGAagCGGCGCGgaggcgucgGCGGCUUGa-CGAGCa -3'
miRNA:   3'- -GUUa-GCCGUGU---------UGCCGGACgaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 53857 0.67 0.939117
Target:  5'- ---cCGGCgGCGGCGGCgCcGC-CGAGCg -3'
miRNA:   3'- guuaGCCG-UGUUGCCG-GaCGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 89442 0.67 0.939117
Target:  5'- --uUCGGCGCGcACGGaCCccucgcgGCUCAcgucgGGCg -3'
miRNA:   3'- guuAGCCGUGU-UGCC-GGa------CGAGU-----UCG- -5'
7654 3' -53.1 NC_001973.1 + 7100 0.67 0.943844
Target:  5'- ---gCGcGCGCGACcGCCgucgUGCUCGAGUg -3'
miRNA:   3'- guuaGC-CGUGUUGcCGG----ACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 77967 0.67 0.943844
Target:  5'- --cUCGaacGC-CAugGGCCUGCcCGAGUa -3'
miRNA:   3'- guuAGC---CGuGUugCCGGACGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 111783 0.67 0.943844
Target:  5'- ---gCGGCAUAcACGGCCagaagggcgUGCUCAacgGGUg -3'
miRNA:   3'- guuaGCCGUGU-UGCCGG---------ACGAGU---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.