Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 83935 | 0.68 | 0.934141 |
Target: 5'- ---gCGGaCACGGCGcGCC-GCUCGgaGGCg -3' miRNA: 3'- guuaGCC-GUGUUGC-CGGaCGAGU--UCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 9769 | 0.68 | 0.93363 |
Target: 5'- gCGAUCGuuuUAUAGCGGCCcaucaauUGCUCcGGCg -3' miRNA: 3'- -GUUAGCc--GUGUUGCCGG-------ACGAGuUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 124718 | 0.68 | 0.928916 |
Target: 5'- ---aCGGCAgGuucuACGGCCUGgaccgCGAGCg -3' miRNA: 3'- guuaGCCGUgU----UGCCGGACga---GUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 29744 | 0.68 | 0.917714 |
Target: 5'- ---cCGGCcuucuuCGACGGCCUGUgCGAGa -3' miRNA: 3'- guuaGCCGu-----GUUGCCGGACGaGUUCg -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 1824 | 0.68 | 0.917714 |
Target: 5'- cCGAgCGcGCAC-ACGGCCagGCUguGGCa -3' miRNA: 3'- -GUUaGC-CGUGuUGCCGGa-CGAguUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 20084 | 0.68 | 0.917714 |
Target: 5'- cCGAgCGaGCAC-ACGGCCagGCUguGGCa -3' miRNA: 3'- -GUUaGC-CGUGuUGCCGGa-CGAguUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 128122 | 0.68 | 0.917714 |
Target: 5'- cCGAgCGaGCAC-ACGGCCagGCUguGGCa -3' miRNA: 3'- -GUUaGC-CGUGuUGCCGGa-CGAguUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 106041 | 0.68 | 0.911738 |
Target: 5'- ---aCGGC-CGGCGGUCguaGUUCAGGUa -3' miRNA: 3'- guuaGCCGuGUUGCCGGa--CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 119265 | 0.68 | 0.911738 |
Target: 5'- -----aGCGCAGCGGCCUGUacgaCGAGUu -3' miRNA: 3'- guuagcCGUGUUGCCGGACGa---GUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 109728 | 0.68 | 0.911738 |
Target: 5'- -uGUCGuuGC-ACGGCUUGCgCGAGCg -3' miRNA: 3'- guUAGCcgUGuUGCCGGACGaGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 18617 | 0.69 | 0.905515 |
Target: 5'- -cGUCGGCA--ACGaGCCgccGUUCGAGCc -3' miRNA: 3'- guUAGCCGUguUGC-CGGa--CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 28630 | 0.69 | 0.905515 |
Target: 5'- aGGUCGuuGCGCAGCGaGuCCUGCagcugcgCGAGCg -3' miRNA: 3'- gUUAGC--CGUGUUGC-C-GGACGa------GUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 55816 | 0.69 | 0.902956 |
Target: 5'- uCGAaCGGCgACAGaGGCCUGCggaccggcgagggCGAGCg -3' miRNA: 3'- -GUUaGCCG-UGUUgCCGGACGa------------GUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 139871 | 0.69 | 0.892334 |
Target: 5'- ---cUGGCACcacuugauCGGCaaGCUCGAGCg -3' miRNA: 3'- guuaGCCGUGuu------GCCGgaCGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 7271 | 0.69 | 0.89165 |
Target: 5'- --cUCGGCGCGcgGCGcGCCcGCuaccgggUCAAGCa -3' miRNA: 3'- guuAGCCGUGU--UGC-CGGaCG-------AGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 55888 | 0.69 | 0.885384 |
Target: 5'- ---cCGGCgGCGGCaGGCUcggGCUCGGGCu -3' miRNA: 3'- guuaGCCG-UGUUG-CCGGa--CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 30491 | 0.69 | 0.878199 |
Target: 5'- gCAGUCgGGCACGACGGU--GCgcaGGGCg -3' miRNA: 3'- -GUUAG-CCGUGUUGCCGgaCGag-UUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 30395 | 0.69 | 0.878199 |
Target: 5'- ---cCGGCGCGGCGGCggcgGCggAGGCg -3' miRNA: 3'- guuaGCCGUGUUGCCGga--CGagUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 60378 | 0.7 | 0.870784 |
Target: 5'- uCAcgCGGCACAAUaGCUgcacGCUCGAGg -3' miRNA: 3'- -GUuaGCCGUGUUGcCGGa---CGAGUUCg -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 8100 | 0.7 | 0.870784 |
Target: 5'- ---aCGGCgaGCAcCGGCCgGCUCGuGCa -3' miRNA: 3'- guuaGCCG--UGUuGCCGGaCGAGUuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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