Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 45837 | 0.67 | 0.948325 |
Target: 5'- gGcgCGGCGuuCGugGGCCUggGCgucgCGGGCg -3' miRNA: 3'- gUuaGCCGU--GUugCCGGA--CGa---GUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 45878 | 0.67 | 0.947888 |
Target: 5'- --cUCGGC-C-GCGGCgCUGCUCGucgacuucgagacGGCa -3' miRNA: 3'- guuAGCCGuGuUGCCG-GACGAGU-------------UCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 45951 | 0.66 | 0.973115 |
Target: 5'- ---aCGGCGCGcucuugacgGCGGCCggcgcGCUCGcccuGCu -3' miRNA: 3'- guuaGCCGUGU---------UGCCGGa----CGAGUu---CG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 46214 | 0.73 | 0.726808 |
Target: 5'- --uUCGcGCGCGACGGCCgGgUCAuguGCg -3' miRNA: 3'- guuAGC-CGUGUUGCCGGaCgAGUu--CG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 48399 | 0.75 | 0.581479 |
Target: 5'- aCAGUCGGCGCuga-GCCUGCUCcaagacgcccAAGCg -3' miRNA: 3'- -GUUAGCCGUGuugcCGGACGAG----------UUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 50535 | 0.67 | 0.948325 |
Target: 5'- --cUCGGC-CAGCuGGCgCucgUGCUCGAGUu -3' miRNA: 3'- guuAGCCGuGUUG-CCG-G---ACGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 50763 | 0.76 | 0.530205 |
Target: 5'- --cUUGGC-CAGCGGCUUGUUgGAGCg -3' miRNA: 3'- guuAGCCGuGUUGCCGGACGAgUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 51740 | 0.67 | 0.95656 |
Target: 5'- ----gGGCACGugGGCCgUGUgCGAGg -3' miRNA: 3'- guuagCCGUGUugCCGG-ACGaGUUCg -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 53857 | 0.67 | 0.939117 |
Target: 5'- ---cCGGCgGCGGCGGCgCcGC-CGAGCg -3' miRNA: 3'- guuaGCCG-UGUUGCCG-GaCGaGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 55816 | 0.69 | 0.902956 |
Target: 5'- uCGAaCGGCgACAGaGGCCUGCggaccggcgagggCGAGCg -3' miRNA: 3'- -GUUaGCCG-UGUUgCCGGACGa------------GUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 55888 | 0.69 | 0.885384 |
Target: 5'- ---cCGGCgGCGGCaGGCUcggGCUCGGGCu -3' miRNA: 3'- guuaGCCG-UGUUG-CCGGa--CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 56333 | 0.76 | 0.530205 |
Target: 5'- --cUCGGCGCcgcgcucGCGGCCgcGCUCGGGCc -3' miRNA: 3'- guuAGCCGUGu------UGCCGGa-CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 56441 | 0.67 | 0.959956 |
Target: 5'- --cUCGGCGCcaagcucgggcggGGCGGgCUcggcgccaaGCUCGGGCg -3' miRNA: 3'- guuAGCCGUG-------------UUGCCgGA---------CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 56495 | 0.67 | 0.959956 |
Target: 5'- --cUCGGCGCcaagcucgggcggGGCGGgCUcggcgccaaGCUCGGGCg -3' miRNA: 3'- guuAGCCGUG-------------UUGCCgGA---------CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 57186 | 0.66 | 0.975781 |
Target: 5'- gCAGUCGaGaCGCGACGGC--GUUCAGGg -3' miRNA: 3'- -GUUAGC-C-GUGUUGCCGgaCGAGUUCg -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 58046 | 0.67 | 0.95656 |
Target: 5'- ---cCGGCgGCGGCGGCg-GCUCuuGCa -3' miRNA: 3'- guuaGCCG-UGUUGCCGgaCGAGuuCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 59728 | 0.7 | 0.84722 |
Target: 5'- --uUCGGCugcugugcgACAACGGCCaccggGC-CGAGCu -3' miRNA: 3'- guuAGCCG---------UGUUGCCGGa----CGaGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 60378 | 0.7 | 0.870784 |
Target: 5'- uCAcgCGGCACAAUaGCUgcacGCUCGAGg -3' miRNA: 3'- -GUuaGCCGUGUUGcCGGa---CGAGUUCg -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 61676 | 0.74 | 0.665067 |
Target: 5'- aCAGUcgCGGCGCGaaGCGGCgUcggcgcGCUCGAGCa -3' miRNA: 3'- -GUUA--GCCGUGU--UGCCGgA------CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 62016 | 0.66 | 0.970243 |
Target: 5'- ---gCGGCGCAACcGCCcGCUgGuGCg -3' miRNA: 3'- guuaGCCGUGUUGcCGGaCGAgUuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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