miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 62587 0.7 0.838947
Target:  5'- ----gGGCGCAGCGacGCgUcGCUCGAGCg -3'
miRNA:   3'- guuagCCGUGUUGC--CGgA-CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 65182 0.67 0.951317
Target:  5'- gAGUCGGCGCucaacuacaugcucGACaugGGCCgGCaCGAGCg -3'
miRNA:   3'- gUUAGCCGUG--------------UUG---CCGGaCGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 69550 0.7 0.855288
Target:  5'- gAGUCGaGCGCGACGuaGCCgucGCUC-GGCa -3'
miRNA:   3'- gUUAGC-CGUGUUGC--CGGa--CGAGuUCG- -5'
7654 3' -53.1 NC_001973.1 + 70118 0.67 0.948325
Target:  5'- --cUCGGCGCccGCGGCgaUG-UCGAGCa -3'
miRNA:   3'- guuAGCCGUGu-UGCCGg-ACgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 75230 0.73 0.716674
Target:  5'- aCGGUCGGCGCGuacaacaucaACGuucucgacacccGCCUGCUCGacgGGCu -3'
miRNA:   3'- -GUUAGCCGUGU----------UGC------------CGGACGAGU---UCG- -5'
7654 3' -53.1 NC_001973.1 + 76563 0.67 0.952563
Target:  5'- gCGAUCGGCgugaACGAaucgagcgUGGCCgagGCggcCAAGCa -3'
miRNA:   3'- -GUUAGCCG----UGUU--------GCCGGa--CGa--GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 77967 0.67 0.943844
Target:  5'- --cUCGaacGC-CAugGGCCUGCcCGAGUa -3'
miRNA:   3'- guuAGC---CGuGUugCCGGACGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 81786 0.66 0.972837
Target:  5'- --cUCGGCGCGaaagugcACGGCCgcgGUgUCcGGCg -3'
miRNA:   3'- guuAGCCGUGU-------UGCCGGa--CG-AGuUCG- -5'
7654 3' -53.1 NC_001973.1 + 83935 0.68 0.934141
Target:  5'- ---gCGGaCACGGCGcGCC-GCUCGgaGGCg -3'
miRNA:   3'- guuaGCC-GUGUUGC-CGGaCGAGU--UCG- -5'
7654 3' -53.1 NC_001973.1 + 86748 0.67 0.960322
Target:  5'- ---gCGGCGC-GCGGCCUcGUUCc-GCg -3'
miRNA:   3'- guuaGCCGUGuUGCCGGA-CGAGuuCG- -5'
7654 3' -53.1 NC_001973.1 + 87826 0.7 0.84722
Target:  5'- cCAGUCGaaGUGCAGCGGCCccuUG-UCGGGCg -3'
miRNA:   3'- -GUUAGC--CGUGUUGCCGG---ACgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 89442 0.67 0.939117
Target:  5'- --uUCGGCGCGcACGGaCCccucgcgGCUCAcgucgGGCg -3'
miRNA:   3'- guuAGCCGUGU-UGCC-GGa------CGAGU-----UCG- -5'
7654 3' -53.1 NC_001973.1 + 90282 0.67 0.952563
Target:  5'- -cGUCGGCu---CGGCCggUGUUCAAGg -3'
miRNA:   3'- guUAGCCGuguuGCCGG--ACGAGUUCg -5'
7654 3' -53.1 NC_001973.1 + 90524 0.67 0.952563
Target:  5'- --uUC-GC-CAGCGGCUUGUUgGAGCg -3'
miRNA:   3'- guuAGcCGuGUUGCCGGACGAgUUCG- -5'
7654 3' -53.1 NC_001973.1 + 94717 0.67 0.960322
Target:  5'- gGGUgGGCGaGGCGGCCgg--CAAGCg -3'
miRNA:   3'- gUUAgCCGUgUUGCCGGacgaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 95121 0.66 0.975781
Target:  5'- uCAAgcuggCGGUGCAcgacccguggGCGGCCgUGCagAAGCc -3'
miRNA:   3'- -GUUa----GCCGUGU----------UGCCGG-ACGagUUCG- -5'
7654 3' -53.1 NC_001973.1 + 96043 0.7 0.855288
Target:  5'- --cUCgGGCugGGCGGUCUGUUCGcGUg -3'
miRNA:   3'- guuAG-CCGugUUGCCGGACGAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 98350 0.67 0.960322
Target:  5'- ---gCGGCGCGcguuCGGCC-GCuuUCGGGCu -3'
miRNA:   3'- guuaGCCGUGUu---GCCGGaCG--AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 101010 0.66 0.970243
Target:  5'- aAAUCGGCGCugcccuUGGCgCcGCUCucgauGAGCg -3'
miRNA:   3'- gUUAGCCGUGuu----GCCG-GaCGAG-----UUCG- -5'
7654 3' -53.1 NC_001973.1 + 101110 0.66 0.967158
Target:  5'- uCAGUCGGCACAGCucCUUGUaCA-GCa -3'
miRNA:   3'- -GUUAGCCGUGUUGccGGACGaGUuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.