miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 104607 0.66 0.969944
Target:  5'- -cGUCGGCggcgcgcgaaaagACGACGuGCCUcagaUCGAGCg -3'
miRNA:   3'- guUAGCCG-------------UGUUGC-CGGAcg--AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 105360 0.67 0.939117
Target:  5'- aCGAagCGGCGCGgaggcgucgGCGGCUUGa-CGAGCa -3'
miRNA:   3'- -GUUa-GCCGUGU---------UGCCGGACgaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 106041 0.68 0.911738
Target:  5'- ---aCGGC-CGGCGGUCguaGUUCAGGUa -3'
miRNA:   3'- guuaGCCGuGUUGCCGGa--CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 109128 0.67 0.95656
Target:  5'- ---gCGGCG--GCGGCCU-CUUggGCg -3'
miRNA:   3'- guuaGCCGUguUGCCGGAcGAGuuCG- -5'
7654 3' -53.1 NC_001973.1 + 109344 0.66 0.972837
Target:  5'- aCAGcCGGCGCAGCuccgcucGGCCguaGCggucgaCGAGCg -3'
miRNA:   3'- -GUUaGCCGUGUUG-------CCGGa--CGa-----GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 109728 0.68 0.911738
Target:  5'- -uGUCGuuGC-ACGGCUUGCgCGAGCg -3'
miRNA:   3'- guUAGCcgUGuUGCCGGACGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 110746 0.77 0.510145
Target:  5'- gCGGUCGccgacagguuuGCGCAucucgagacgGCGGCCUGCUCcGGCg -3'
miRNA:   3'- -GUUAGC-----------CGUGU----------UGCCGGACGAGuUCG- -5'
7654 3' -53.1 NC_001973.1 + 111012 0.67 0.948325
Target:  5'- gAcgUGaGCAUcGCGuGCCUGCUCAcGCc -3'
miRNA:   3'- gUuaGC-CGUGuUGC-CGGACGAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 111783 0.67 0.943844
Target:  5'- ---gCGGCAUAcACGGCCagaagggcgUGCUCAacgGGUg -3'
miRNA:   3'- guuaGCCGUGU-UGCCGG---------ACGAGU---UCG- -5'
7654 3' -53.1 NC_001973.1 + 112751 0.66 0.970243
Target:  5'- gCGAaCGGCGaccguGCGGCCgGCUCGucgacGCu -3'
miRNA:   3'- -GUUaGCCGUgu---UGCCGGaCGAGUu----CG- -5'
7654 3' -53.1 NC_001973.1 + 112851 0.7 0.838947
Target:  5'- ---cCGcGCACAGC-GCCaGCUCGGGCu -3'
miRNA:   3'- guuaGC-CGUGUUGcCGGaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 115396 0.73 0.726808
Target:  5'- ---cCGGCugAGCGcGCacgauucgcggCUGCUCAAGCu -3'
miRNA:   3'- guuaGCCGugUUGC-CG-----------GACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 118107 0.66 0.973115
Target:  5'- aCGGUgGGC---GCGGC--GCUCAAGCa -3'
miRNA:   3'- -GUUAgCCGuguUGCCGgaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 119265 0.68 0.911738
Target:  5'- -----aGCGCAGCGGCCUGUacgaCGAGUu -3'
miRNA:   3'- guuagcCGUGUUGCCGGACGa---GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 120948 0.73 0.716674
Target:  5'- gCGGUCuGCACGGCGGCCaGCgc-GGCg -3'
miRNA:   3'- -GUUAGcCGUGUUGCCGGaCGaguUCG- -5'
7654 3' -53.1 NC_001973.1 + 123371 0.66 0.973115
Target:  5'- gGAUCGcacgccgcGCGCAACGcGCC-GUucgUCAAGCg -3'
miRNA:   3'- gUUAGC--------CGUGUUGC-CGGaCG---AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 123993 0.7 0.838947
Target:  5'- ---aCGGCgACGucGCGGCCUGaccagUCGGGCg -3'
miRNA:   3'- guuaGCCG-UGU--UGCCGGACg----AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 124299 0.7 0.830477
Target:  5'- gCAAU-GGUACGucgGCGGCacgcGCUCGAGCg -3'
miRNA:   3'- -GUUAgCCGUGU---UGCCGga--CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 124718 0.68 0.928916
Target:  5'- ---aCGGCAgGuucuACGGCCUGgaccgCGAGCg -3'
miRNA:   3'- guuaGCCGUgU----UGCCGGACga---GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 126280 0.79 0.380629
Target:  5'- gCGAUCuGGCGCu-CGGUCaUGCUCGAGCg -3'
miRNA:   3'- -GUUAG-CCGUGuuGCCGG-ACGAGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.