miRNA display CGI


Results 21 - 40 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 118107 0.66 0.973115
Target:  5'- aCGGUgGGC---GCGGC--GCUCAAGCa -3'
miRNA:   3'- -GUUAgCCGuguUGCCGgaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 115396 0.73 0.726808
Target:  5'- ---cCGGCugAGCGcGCacgauucgcggCUGCUCAAGCu -3'
miRNA:   3'- guuaGCCGugUUGC-CG-----------GACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 112851 0.7 0.838947
Target:  5'- ---cCGcGCACAGC-GCCaGCUCGGGCu -3'
miRNA:   3'- guuaGC-CGUGUUGcCGGaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 112751 0.66 0.970243
Target:  5'- gCGAaCGGCGaccguGCGGCCgGCUCGucgacGCu -3'
miRNA:   3'- -GUUaGCCGUgu---UGCCGGaCGAGUu----CG- -5'
7654 3' -53.1 NC_001973.1 + 111783 0.67 0.943844
Target:  5'- ---gCGGCAUAcACGGCCagaagggcgUGCUCAacgGGUg -3'
miRNA:   3'- guuaGCCGUGU-UGCCGG---------ACGAGU---UCG- -5'
7654 3' -53.1 NC_001973.1 + 111012 0.67 0.948325
Target:  5'- gAcgUGaGCAUcGCGuGCCUGCUCAcGCc -3'
miRNA:   3'- gUuaGC-CGUGuUGC-CGGACGAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 110746 0.77 0.510145
Target:  5'- gCGGUCGccgacagguuuGCGCAucucgagacgGCGGCCUGCUCcGGCg -3'
miRNA:   3'- -GUUAGC-----------CGUGU----------UGCCGGACGAGuUCG- -5'
7654 3' -53.1 NC_001973.1 + 109728 0.68 0.911738
Target:  5'- -uGUCGuuGC-ACGGCUUGCgCGAGCg -3'
miRNA:   3'- guUAGCcgUGuUGCCGGACGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 109344 0.66 0.972837
Target:  5'- aCAGcCGGCGCAGCuccgcucGGCCguaGCggucgaCGAGCg -3'
miRNA:   3'- -GUUaGCCGUGUUG-------CCGGa--CGa-----GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 109128 0.67 0.95656
Target:  5'- ---gCGGCG--GCGGCCU-CUUggGCg -3'
miRNA:   3'- guuaGCCGUguUGCCGGAcGAGuuCG- -5'
7654 3' -53.1 NC_001973.1 + 106041 0.68 0.911738
Target:  5'- ---aCGGC-CGGCGGUCguaGUUCAGGUa -3'
miRNA:   3'- guuaGCCGuGUUGCCGGa--CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 105360 0.67 0.939117
Target:  5'- aCGAagCGGCGCGgaggcgucgGCGGCUUGa-CGAGCa -3'
miRNA:   3'- -GUUa-GCCGUGU---------UGCCGGACgaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 104607 0.66 0.969944
Target:  5'- -cGUCGGCggcgcgcgaaaagACGACGuGCCUcagaUCGAGCg -3'
miRNA:   3'- guUAGCCG-------------UGUUGC-CGGAcg--AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 101110 0.66 0.967158
Target:  5'- uCAGUCGGCACAGCucCUUGUaCA-GCa -3'
miRNA:   3'- -GUUAGCCGUGUUGccGGACGaGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 101010 0.66 0.970243
Target:  5'- aAAUCGGCGCugcccuUGGCgCcGCUCucgauGAGCg -3'
miRNA:   3'- gUUAGCCGUGuu----GCCG-GaCGAG-----UUCG- -5'
7654 3' -53.1 NC_001973.1 + 98350 0.67 0.960322
Target:  5'- ---gCGGCGCGcguuCGGCC-GCuuUCGGGCu -3'
miRNA:   3'- guuaGCCGUGUu---GCCGGaCG--AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 96043 0.7 0.855288
Target:  5'- --cUCgGGCugGGCGGUCUGUUCGcGUg -3'
miRNA:   3'- guuAG-CCGugUUGCCGGACGAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 95121 0.66 0.975781
Target:  5'- uCAAgcuggCGGUGCAcgacccguggGCGGCCgUGCagAAGCc -3'
miRNA:   3'- -GUUa----GCCGUGU----------UGCCGG-ACGagUUCG- -5'
7654 3' -53.1 NC_001973.1 + 94717 0.67 0.960322
Target:  5'- gGGUgGGCGaGGCGGCCgg--CAAGCg -3'
miRNA:   3'- gUUAgCCGUgUUGCCGGacgaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 90524 0.67 0.952563
Target:  5'- --uUC-GC-CAGCGGCUUGUUgGAGCg -3'
miRNA:   3'- guuAGcCGuGUUGCCGGACGAgUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.