miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 56441 0.67 0.959956
Target:  5'- --cUCGGCGCcaagcucgggcggGGCGGgCUcggcgccaaGCUCGGGCg -3'
miRNA:   3'- guuAGCCGUG-------------UUGCCgGA---------CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 56333 0.76 0.530205
Target:  5'- --cUCGGCGCcgcgcucGCGGCCgcGCUCGGGCc -3'
miRNA:   3'- guuAGCCGUGu------UGCCGGa-CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 55888 0.69 0.885384
Target:  5'- ---cCGGCgGCGGCaGGCUcggGCUCGGGCu -3'
miRNA:   3'- guuaGCCG-UGUUG-CCGGa--CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 55816 0.69 0.902956
Target:  5'- uCGAaCGGCgACAGaGGCCUGCggaccggcgagggCGAGCg -3'
miRNA:   3'- -GUUaGCCG-UGUUgCCGGACGa------------GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 53857 0.67 0.939117
Target:  5'- ---cCGGCgGCGGCGGCgCcGC-CGAGCg -3'
miRNA:   3'- guuaGCCG-UGUUGCCG-GaCGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 51740 0.67 0.95656
Target:  5'- ----gGGCACGugGGCCgUGUgCGAGg -3'
miRNA:   3'- guuagCCGUGUugCCGG-ACGaGUUCg -5'
7654 3' -53.1 NC_001973.1 + 50763 0.76 0.530205
Target:  5'- --cUUGGC-CAGCGGCUUGUUgGAGCg -3'
miRNA:   3'- guuAGCCGuGUUGCCGGACGAgUUCG- -5'
7654 3' -53.1 NC_001973.1 + 50535 0.67 0.948325
Target:  5'- --cUCGGC-CAGCuGGCgCucgUGCUCGAGUu -3'
miRNA:   3'- guuAGCCGuGUUG-CCG-G---ACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 48399 0.75 0.581479
Target:  5'- aCAGUCGGCGCuga-GCCUGCUCcaagacgcccAAGCg -3'
miRNA:   3'- -GUUAGCCGUGuugcCGGACGAG----------UUCG- -5'
7654 3' -53.1 NC_001973.1 + 46214 0.73 0.726808
Target:  5'- --uUCGcGCGCGACGGCCgGgUCAuguGCg -3'
miRNA:   3'- guuAGC-CGUGUUGCCGGaCgAGUu--CG- -5'
7654 3' -53.1 NC_001973.1 + 45951 0.66 0.973115
Target:  5'- ---aCGGCGCGcucuugacgGCGGCCggcgcGCUCGcccuGCu -3'
miRNA:   3'- guuaGCCGUGU---------UGCCGGa----CGAGUu---CG- -5'
7654 3' -53.1 NC_001973.1 + 45878 0.67 0.947888
Target:  5'- --cUCGGC-C-GCGGCgCUGCUCGucgacuucgagacGGCa -3'
miRNA:   3'- guuAGCCGuGuUGCCG-GACGAGU-------------UCG- -5'
7654 3' -53.1 NC_001973.1 + 45837 0.67 0.948325
Target:  5'- gGcgCGGCGuuCGugGGCCUggGCgucgCGGGCg -3'
miRNA:   3'- gUuaGCCGU--GUugCCGGA--CGa---GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 45641 0.66 0.970243
Target:  5'- -cGUCGaGCGCGgcgucguacGCGGCCUGCgcgucucggauUCGcGCg -3'
miRNA:   3'- guUAGC-CGUGU---------UGCCGGACG-----------AGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 45366 0.7 0.830477
Target:  5'- -cGUCGuGCAgUAGCcGCCuUGCUCGAGCa -3'
miRNA:   3'- guUAGC-CGU-GUUGcCGG-ACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 44774 0.73 0.685859
Target:  5'- ----gGGCACAGCGGUUUGCU--GGCg -3'
miRNA:   3'- guuagCCGUGUUGCCGGACGAguUCG- -5'
7654 3' -53.1 NC_001973.1 + 44410 0.68 0.934141
Target:  5'- --cUCGcGCAgCAGCGGCUccGCUCGGGg -3'
miRNA:   3'- guuAGC-CGU-GUUGCCGGa-CGAGUUCg -5'
7654 3' -53.1 NC_001973.1 + 41137 0.67 0.95656
Target:  5'- -uGUCGGCgGCGGCGGCg-GUcagCGGGCg -3'
miRNA:   3'- guUAGCCG-UGUUGCCGgaCGa--GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 40481 0.67 0.959956
Target:  5'- aAAUCGacGCGCGucaGCGGCCUGaUCAccgugacGGCg -3'
miRNA:   3'- gUUAGC--CGUGU---UGCCGGACgAGU-------UCG- -5'
7654 3' -53.1 NC_001973.1 + 38630 0.76 0.530205
Target:  5'- -uGUCGGCgACAcCGGCCgUGCUCGcGGCg -3'
miRNA:   3'- guUAGCCG-UGUuGCCGG-ACGAGU-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.