Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 38521 | 0.66 | 0.970243 |
Target: 5'- ---gCGGCACAGCgcgaGGCCgucGCaaAGGCg -3' miRNA: 3'- guuaGCCGUGUUG----CCGGa--CGagUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 38436 | 0.67 | 0.956947 |
Target: 5'- -cGUUGGCGCGcaccGCGGCCguuccguacuuggcgGCgaCGAGCg -3' miRNA: 3'- guUAGCCGUGU----UGCCGGa--------------CGa-GUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 31364 | 0.66 | 0.973115 |
Target: 5'- uGGUCGcCGCGGCGGUgUGCgCcAGCg -3' miRNA: 3'- gUUAGCcGUGUUGCCGgACGaGuUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 31022 | 0.75 | 0.571121 |
Target: 5'- -cGUCGGCGCucAUGaUCUGCUCGAGCg -3' miRNA: 3'- guUAGCCGUGu-UGCcGGACGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 30491 | 0.69 | 0.878199 |
Target: 5'- gCAGUCgGGCACGACGGU--GCgcaGGGCg -3' miRNA: 3'- -GUUAG-CCGUGUUGCCGgaCGag-UUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 30395 | 0.69 | 0.878199 |
Target: 5'- ---cCGGCGCGGCGGCggcgGCggAGGCg -3' miRNA: 3'- guuaGCCGUGUUGCCGga--CGagUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 29744 | 0.68 | 0.917714 |
Target: 5'- ---cCGGCcuucuuCGACGGCCUGUgCGAGa -3' miRNA: 3'- guuaGCCGu-----GUUGCCGGACGaGUUCg -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 28951 | 0.67 | 0.943844 |
Target: 5'- ---gCGGCAgCGGgGGCCgGCagUCGGGCg -3' miRNA: 3'- guuaGCCGU-GUUgCCGGaCG--AGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 28630 | 0.69 | 0.905515 |
Target: 5'- aGGUCGuuGCGCAGCGaGuCCUGCagcugcgCGAGCg -3' miRNA: 3'- gUUAGC--CGUGUUGC-C-GGACGa------GUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 27856 | 0.73 | 0.685859 |
Target: 5'- ---cCGGCGCuGGCGGCCgcgGCcgCGGGCg -3' miRNA: 3'- guuaGCCGUG-UUGCCGGa--CGa-GUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 23814 | 0.67 | 0.948325 |
Target: 5'- --uUCGGCGacGCGGCCcucgccgaGUUCAAGUa -3' miRNA: 3'- guuAGCCGUguUGCCGGa-------CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 23221 | 0.66 | 0.970243 |
Target: 5'- gCAGU-GGCGCAGggccUGGCgCUGCU-GAGCg -3' miRNA: 3'- -GUUAgCCGUGUU----GCCG-GACGAgUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 22534 | 0.67 | 0.948325 |
Target: 5'- aCAAUUGcGCGCGACaggugacggcgGGCgaGUUCGAGUg -3' miRNA: 3'- -GUUAGC-CGUGUUG-----------CCGgaCGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 20084 | 0.68 | 0.917714 |
Target: 5'- cCGAgCGaGCAC-ACGGCCagGCUguGGCa -3' miRNA: 3'- -GUUaGC-CGUGuUGCCGGa-CGAguUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 18617 | 0.69 | 0.905515 |
Target: 5'- -cGUCGGCA--ACGaGCCgccGUUCGAGCc -3' miRNA: 3'- guUAGCCGUguUGC-CGGa--CGAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 18265 | 0.74 | 0.658804 |
Target: 5'- -cGUCGGCGCAcACGGCCgacgaggGCaccagcgccacgcuuUCGAGCa -3' miRNA: 3'- guUAGCCGUGU-UGCCGGa------CG---------------AGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 17578 | 0.71 | 0.821819 |
Target: 5'- gAAUCGGCGCccgaguCGGCgUGCU--GGCa -3' miRNA: 3'- gUUAGCCGUGuu----GCCGgACGAguUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 17259 | 0.76 | 0.530205 |
Target: 5'- --cUCGGcCGCGGCGGCCgcgcaCUCGGGCa -3' miRNA: 3'- guuAGCC-GUGUUGCCGGac---GAGUUCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 16907 | 0.72 | 0.766387 |
Target: 5'- ---cCGGCgGCGGCGGCCU-CUCGgcGGCg -3' miRNA: 3'- guuaGCCG-UGUUGCCGGAcGAGU--UCG- -5' |
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7654 | 3' | -53.1 | NC_001973.1 | + | 16186 | 0.7 | 0.863145 |
Target: 5'- -uGUCGGCGCA--GGCC-GCUaGAGCg -3' miRNA: 3'- guUAGCCGUGUugCCGGaCGAgUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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