miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 118107 0.66 0.973115
Target:  5'- aCGGUgGGC---GCGGC--GCUCAAGCa -3'
miRNA:   3'- -GUUAgCCGuguUGCCGgaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 123371 0.66 0.973115
Target:  5'- gGAUCGcacgccgcGCGCAACGcGCC-GUucgUCAAGCg -3'
miRNA:   3'- gUUAGC--------CGUGUUGC-CGGaCG---AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 95121 0.66 0.975781
Target:  5'- uCAAgcuggCGGUGCAcgacccguggGCGGCCgUGCagAAGCc -3'
miRNA:   3'- -GUUa----GCCGUGU----------UGCCGG-ACGagUUCG- -5'
7654 3' -53.1 NC_001973.1 + 5431 0.66 0.975781
Target:  5'- uGAUCGcGUcCAAgGaGCCgaGCUCGGGCa -3'
miRNA:   3'- gUUAGC-CGuGUUgC-CGGa-CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 7049 0.66 0.975781
Target:  5'- gAGUCGGUcgugaacgaGCuGCGcGcCCUGgUCGAGCg -3'
miRNA:   3'- gUUAGCCG---------UGuUGC-C-GGACgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 45641 0.66 0.970243
Target:  5'- -cGUCGaGCGCGgcgucguacGCGGCCUGCgcgucucggauUCGcGCg -3'
miRNA:   3'- guUAGC-CGUGU---------UGCCGGACG-----------AGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 62016 0.66 0.970243
Target:  5'- ---gCGGCGCAACcGCCcGCUgGuGCg -3'
miRNA:   3'- guuaGCCGUGUUGcCGGaCGAgUuCG- -5'
7654 3' -53.1 NC_001973.1 + 56441 0.67 0.959956
Target:  5'- --cUCGGCGCcaagcucgggcggGGCGGgCUcggcgccaaGCUCGGGCg -3'
miRNA:   3'- guuAGCCGUG-------------UUGCCgGA---------CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 56495 0.67 0.959956
Target:  5'- --cUCGGCGCcaagcucgggcggGGCGGgCUcggcgccaaGCUCGGGCg -3'
miRNA:   3'- guuAGCCGUG-------------UUGCCgGA---------CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 98350 0.67 0.960322
Target:  5'- ---gCGGCGCGcguuCGGCC-GCuuUCGGGCu -3'
miRNA:   3'- guuaGCCGUGUu---GCCGGaCG--AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 86748 0.67 0.960322
Target:  5'- ---gCGGCGC-GCGGCCUcGUUCc-GCg -3'
miRNA:   3'- guuaGCCGUGuUGCCGGA-CGAGuuCG- -5'
7654 3' -53.1 NC_001973.1 + 94717 0.67 0.960322
Target:  5'- gGGUgGGCGaGGCGGCCgg--CAAGCg -3'
miRNA:   3'- gUUAgCCGUgUUGCCGGacgaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 132454 0.66 0.963853
Target:  5'- ---cCGGCGgGgcGCGGCCUcgUCGGGCu -3'
miRNA:   3'- guuaGCCGUgU--UGCCGGAcgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 101110 0.66 0.967158
Target:  5'- uCAGUCGGCACAGCucCUUGUaCA-GCa -3'
miRNA:   3'- -GUUAGCCGUGUUGccGGACGaGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 133452 0.66 0.967158
Target:  5'- aAGUCGGCGCGcgggucgcgcACGgagcGCCaGCgggCGAGCa -3'
miRNA:   3'- gUUAGCCGUGU----------UGC----CGGaCGa--GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 136908 0.66 0.967158
Target:  5'- --cUUGGCGCAgcACGGCUUGCauaUCAGu- -3'
miRNA:   3'- guuAGCCGUGU--UGCCGGACG---AGUUcg -5'
7654 3' -53.1 NC_001973.1 + 138577 0.66 0.969944
Target:  5'- --uUCGGC-CAGCGcGCCcuccggaUGCUugaCGAGCa -3'
miRNA:   3'- guuAGCCGuGUUGC-CGG-------ACGA---GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 104607 0.66 0.969944
Target:  5'- -cGUCGGCggcgcgcgaaaagACGACGuGCCUcagaUCGAGCg -3'
miRNA:   3'- guUAGCCG-------------UGUUGC-CGGAcg--AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 23221 0.66 0.970243
Target:  5'- gCAGU-GGCGCAGggccUGGCgCUGCU-GAGCg -3'
miRNA:   3'- -GUUAgCCGUGUU----GCCG-GACGAgUUCG- -5'
7654 3' -53.1 NC_001973.1 + 38521 0.66 0.970243
Target:  5'- ---gCGGCACAGCgcgaGGCCgucGCaaAGGCg -3'
miRNA:   3'- guuaGCCGUGUUG----CCGGa--CGagUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.