miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 45837 0.67 0.948325
Target:  5'- gGcgCGGCGuuCGugGGCCUggGCgucgCGGGCg -3'
miRNA:   3'- gUuaGCCGU--GUugCCGGA--CGa---GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 22534 0.67 0.948325
Target:  5'- aCAAUUGcGCGCGACaggugacggcgGGCgaGUUCGAGUg -3'
miRNA:   3'- -GUUAGC-CGUGUUG-----------CCGgaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 4960 0.67 0.948325
Target:  5'- aCGAaCGGCACGGCGaGCC-GgUCGuGCg -3'
miRNA:   3'- -GUUaGCCGUGUUGC-CGGaCgAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 4852 0.67 0.948325
Target:  5'- aAGUCGGCgggcGCGACGuuuccGCCgUGCUCGuacaagGGCa -3'
miRNA:   3'- gUUAGCCG----UGUUGC-----CGG-ACGAGU------UCG- -5'
7654 3' -53.1 NC_001973.1 + 111012 0.67 0.948325
Target:  5'- gAcgUGaGCAUcGCGuGCCUGCUCAcGCc -3'
miRNA:   3'- gUuaGC-CGUGuUGC-CGGACGAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 70118 0.67 0.948325
Target:  5'- --cUCGGCGCccGCGGCgaUG-UCGAGCa -3'
miRNA:   3'- guuAGCCGUGu-UGCCGg-ACgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 23814 0.67 0.948325
Target:  5'- --uUCGGCGacGCGGCCcucgccgaGUUCAAGUa -3'
miRNA:   3'- guuAGCCGUguUGCCGGa-------CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 76563 0.67 0.952563
Target:  5'- gCGAUCGGCgugaACGAaucgagcgUGGCCgagGCggcCAAGCa -3'
miRNA:   3'- -GUUAGCCG----UGUU--------GCCGGa--CGa--GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 90282 0.67 0.952563
Target:  5'- -cGUCGGCu---CGGCCggUGUUCAAGg -3'
miRNA:   3'- guUAGCCGuguuGCCGG--ACGAGUUCg -5'
7654 3' -53.1 NC_001973.1 + 141921 0.67 0.952563
Target:  5'- cCAAUCGaGCAgCGGCGGCaacaacagcaGCUCGccGGCg -3'
miRNA:   3'- -GUUAGC-CGU-GUUGCCGga--------CGAGU--UCG- -5'
7654 3' -53.1 NC_001973.1 + 98350 0.67 0.960322
Target:  5'- ---gCGGCGCGcguuCGGCC-GCuuUCGGGCu -3'
miRNA:   3'- guuaGCCGUGUu---GCCGGaCG--AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 56495 0.67 0.959956
Target:  5'- --cUCGGCGCcaagcucgggcggGGCGGgCUcggcgccaaGCUCGGGCg -3'
miRNA:   3'- guuAGCCGUG-------------UUGCCgGA---------CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 56441 0.67 0.959956
Target:  5'- --cUCGGCGCcaagcucgggcggGGCGGgCUcggcgccaaGCUCGGGCg -3'
miRNA:   3'- guuAGCCGUG-------------UUGCCgGA---------CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 40481 0.67 0.959956
Target:  5'- aAAUCGacGCGCGucaGCGGCCUGaUCAccgugacGGCg -3'
miRNA:   3'- gUUAGC--CGUGU---UGCCGGACgAGU-------UCG- -5'
7654 3' -53.1 NC_001973.1 + 38436 0.67 0.956947
Target:  5'- -cGUUGGCGCGcaccGCGGCCguuccguacuuggcgGCgaCGAGCg -3'
miRNA:   3'- guUAGCCGUGU----UGCCGGa--------------CGa-GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 109128 0.67 0.95656
Target:  5'- ---gCGGCG--GCGGCCU-CUUggGCg -3'
miRNA:   3'- guuaGCCGUguUGCCGGAcGAGuuCG- -5'
7654 3' -53.1 NC_001973.1 + 58046 0.67 0.95656
Target:  5'- ---cCGGCgGCGGCGGCg-GCUCuuGCa -3'
miRNA:   3'- guuaGCCG-UGUUGCCGgaCGAGuuCG- -5'
7654 3' -53.1 NC_001973.1 + 41137 0.67 0.95656
Target:  5'- -uGUCGGCgGCGGCGGCg-GUcagCGGGCg -3'
miRNA:   3'- guUAGCCG-UGUUGCCGgaCGa--GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 51740 0.67 0.95656
Target:  5'- ----gGGCACGugGGCCgUGUgCGAGg -3'
miRNA:   3'- guuagCCGUGUugCCGG-ACGaGUUCg -5'
7654 3' -53.1 NC_001973.1 + 146103 0.67 0.952563
Target:  5'- aGGUCGGgcCGCGGCGcugaGCCgGCUCGggAGCg -3'
miRNA:   3'- gUUAGCC--GUGUUGC----CGGaCGAGU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.