Results 101 - 113 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 40481 | 0.67 | 0.959956 |
Target: 5'- aAAUCGacGCGCGucaGCGGCCUGaUCAccgugacGGCg -3' miRNA: 3'- gUUAGC--CGUGU---UGCCGGACgAGU-------UCG- -5' |
|||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 38436 | 0.67 | 0.956947 |
Target: 5'- -cGUUGGCGCGcaccGCGGCCguuccguacuuggcgGCgaCGAGCg -3' miRNA: 3'- guUAGCCGUGU----UGCCGGa--------------CGa-GUUCG- -5' |
|||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 109128 | 0.67 | 0.95656 |
Target: 5'- ---gCGGCG--GCGGCCU-CUUggGCg -3' miRNA: 3'- guuaGCCGUguUGCCGGAcGAGuuCG- -5' |
|||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 58046 | 0.67 | 0.95656 |
Target: 5'- ---cCGGCgGCGGCGGCg-GCUCuuGCa -3' miRNA: 3'- guuaGCCG-UGUUGCCGgaCGAGuuCG- -5' |
|||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 41137 | 0.67 | 0.95656 |
Target: 5'- -uGUCGGCgGCGGCGGCg-GUcagCGGGCg -3' miRNA: 3'- guUAGCCG-UGUUGCCGgaCGa--GUUCG- -5' |
|||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 51740 | 0.67 | 0.95656 |
Target: 5'- ----gGGCACGugGGCCgUGUgCGAGg -3' miRNA: 3'- guuagCCGUGUugCCGG-ACGaGUUCg -5' |
|||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 146103 | 0.67 | 0.952563 |
Target: 5'- aGGUCGGgcCGCGGCGcugaGCCgGCUCGggAGCg -3' miRNA: 3'- gUUAGCC--GUGUUGC----CGGaCGAGU--UCG- -5' |
|||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 141921 | 0.67 | 0.952563 |
Target: 5'- cCAAUCGaGCAgCGGCGGCaacaacagcaGCUCGccGGCg -3' miRNA: 3'- -GUUAGC-CGU-GUUGCCGga--------CGAGU--UCG- -5' |
|||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 90282 | 0.67 | 0.952563 |
Target: 5'- -cGUCGGCu---CGGCCggUGUUCAAGg -3' miRNA: 3'- guUAGCCGuguuGCCGG--ACGAGUUCg -5' |
|||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 76563 | 0.67 | 0.952563 |
Target: 5'- gCGAUCGGCgugaACGAaucgagcgUGGCCgagGCggcCAAGCa -3' miRNA: 3'- -GUUAGCCG----UGUU--------GCCGGa--CGa--GUUCG- -5' |
|||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 6950 | 0.67 | 0.952563 |
Target: 5'- ---cCGGCGC-ACGGCCuccggcUGCUCGcccgaacagGGCc -3' miRNA: 3'- guuaGCCGUGuUGCCGG------ACGAGU---------UCG- -5' |
|||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 90524 | 0.67 | 0.952563 |
Target: 5'- --uUC-GC-CAGCGGCUUGUUgGAGCg -3' miRNA: 3'- guuAGcCGuGUUGCCGGACGAgUUCG- -5' |
|||||||
7654 | 3' | -53.1 | NC_001973.1 | + | 77967 | 0.67 | 0.943844 |
Target: 5'- --cUCGaacGC-CAugGGCCUGCcCGAGUa -3' miRNA: 3'- guuAGC---CGuGUugCCGGACGaGUUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home