miRNA display CGI


Results 21 - 40 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 101110 0.66 0.967158
Target:  5'- uCAGUCGGCACAGCucCUUGUaCA-GCa -3'
miRNA:   3'- -GUUAGCCGUGUUGccGGACGaGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 133452 0.66 0.967158
Target:  5'- aAGUCGGCGCGcgggucgcgcACGgagcGCCaGCgggCGAGCa -3'
miRNA:   3'- gUUAGCCGUGU----------UGC----CGGaCGa--GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 136908 0.66 0.967158
Target:  5'- --cUUGGCGCAgcACGGCUUGCauaUCAGu- -3'
miRNA:   3'- guuAGCCGUGU--UGCCGGACG---AGUUcg -5'
7654 3' -53.1 NC_001973.1 + 132454 0.66 0.963853
Target:  5'- ---cCGGCGgGgcGCGGCCUcgUCGGGCu -3'
miRNA:   3'- guuaGCCGUgU--UGCCGGAcgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 94717 0.67 0.960322
Target:  5'- gGGUgGGCGaGGCGGCCgg--CAAGCg -3'
miRNA:   3'- gUUAgCCGUgUUGCCGGacgaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 86748 0.67 0.960322
Target:  5'- ---gCGGCGC-GCGGCCUcGUUCc-GCg -3'
miRNA:   3'- guuaGCCGUGuUGCCGGA-CGAGuuCG- -5'
7654 3' -53.1 NC_001973.1 + 98350 0.67 0.960322
Target:  5'- ---gCGGCGCGcguuCGGCC-GCuuUCGGGCu -3'
miRNA:   3'- guuaGCCGUGUu---GCCGGaCG--AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 40481 0.67 0.959956
Target:  5'- aAAUCGacGCGCGucaGCGGCCUGaUCAccgugacGGCg -3'
miRNA:   3'- gUUAGC--CGUGU---UGCCGGACgAGU-------UCG- -5'
7654 3' -53.1 NC_001973.1 + 56441 0.67 0.959956
Target:  5'- --cUCGGCGCcaagcucgggcggGGCGGgCUcggcgccaaGCUCGGGCg -3'
miRNA:   3'- guuAGCCGUG-------------UUGCCgGA---------CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 56495 0.67 0.959956
Target:  5'- --cUCGGCGCcaagcucgggcggGGCGGgCUcggcgccaaGCUCGGGCg -3'
miRNA:   3'- guuAGCCGUG-------------UUGCCgGA---------CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 38436 0.67 0.956947
Target:  5'- -cGUUGGCGCGcaccGCGGCCguuccguacuuggcgGCgaCGAGCg -3'
miRNA:   3'- guUAGCCGUGU----UGCCGGa--------------CGa-GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 51740 0.67 0.95656
Target:  5'- ----gGGCACGugGGCCgUGUgCGAGg -3'
miRNA:   3'- guuagCCGUGUugCCGG-ACGaGUUCg -5'
7654 3' -53.1 NC_001973.1 + 41137 0.67 0.95656
Target:  5'- -uGUCGGCgGCGGCGGCg-GUcagCGGGCg -3'
miRNA:   3'- guUAGCCG-UGUUGCCGgaCGa--GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 58046 0.67 0.95656
Target:  5'- ---cCGGCgGCGGCGGCg-GCUCuuGCa -3'
miRNA:   3'- guuaGCCG-UGUUGCCGgaCGAGuuCG- -5'
7654 3' -53.1 NC_001973.1 + 109128 0.67 0.95656
Target:  5'- ---gCGGCG--GCGGCCU-CUUggGCg -3'
miRNA:   3'- guuaGCCGUguUGCCGGAcGAGuuCG- -5'
7654 3' -53.1 NC_001973.1 + 90524 0.67 0.952563
Target:  5'- --uUC-GC-CAGCGGCUUGUUgGAGCg -3'
miRNA:   3'- guuAGcCGuGUUGCCGGACGAgUUCG- -5'
7654 3' -53.1 NC_001973.1 + 141921 0.67 0.952563
Target:  5'- cCAAUCGaGCAgCGGCGGCaacaacagcaGCUCGccGGCg -3'
miRNA:   3'- -GUUAGC-CGU-GUUGCCGga--------CGAGU--UCG- -5'
7654 3' -53.1 NC_001973.1 + 90282 0.67 0.952563
Target:  5'- -cGUCGGCu---CGGCCggUGUUCAAGg -3'
miRNA:   3'- guUAGCCGuguuGCCGG--ACGAGUUCg -5'
7654 3' -53.1 NC_001973.1 + 76563 0.67 0.952563
Target:  5'- gCGAUCGGCgugaACGAaucgagcgUGGCCgagGCggcCAAGCa -3'
miRNA:   3'- -GUUAGCCG----UGUU--------GCCGGa--CGa--GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 6950 0.67 0.952563
Target:  5'- ---cCGGCGC-ACGGCCuccggcUGCUCGcccgaacagGGCc -3'
miRNA:   3'- guuaGCCGUGuUGCCGG------ACGAGU---------UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.